Array 1 112-1137 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNCE01000021.1 Mycoplasma testudineum strain BH29 NODE_21_length_1260_cov_37.6915, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112 36 100.0 30 .................................... TAAACGATAAGGTTCTAAAATATGACTTTT 178 36 100.0 30 .................................... GCAGCAGGACCTTCATATCGCTCAAAACCT 244 36 100.0 30 .................................... TATTATTAGAAATTCGAGAATTAGATAATG 310 36 100.0 30 .................................... ACAAGAAGAGATATATTATTAGGAAAATTT 376 36 100.0 30 .................................... AACTTTTTAAAGATGTATTTATCTCTTTTT 442 36 100.0 30 .................................... GCAAGCGTTTAGCGGTATACCTCTTAAACA 508 36 100.0 30 .................................... GTCGTCGTTAATTCAAATGGCATTGTTTTT 574 36 100.0 30 .................................... GTGCCTTCAAATTCTAATTTTCAGGCTCCG 640 36 100.0 30 .................................... TGCAGTTGATTCGCTTCTCGGTCTTTATAA 706 36 100.0 30 .................................... TAGCATTGACTTCATTAATTAAACTTAATT 772 36 100.0 30 .................................... AAGGTCGTTAACATTTTTTTCGATAATTGT 838 36 100.0 30 .................................... AACAGTAATAATATTAACAACTTAGCAACT 904 36 100.0 30 .................................... TCAATTCGTACAGCTGAACAAACCAACCTT 970 36 100.0 30 .................................... TTTTAGATAAATGACTTTTAAATTTTGAGA 1036 36 100.0 30 .................................... TGTGGGGCGGGCTTAAAAAGCTCGCTTTTT 1102 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTATTGATACAAAAATATAATACTATGCCAAAAC # Left flank : ATGTCGCCTTATAACTTTAGACAACATTCCTTAGAATATATATAATTTTTTTAGTCCAACTTTAAGGTACCACTACAAAACGCAAGAATTTATTAATTATATTTTTAATTTG # Right flank : AACCTCTGAAATTTTAGAAATTCAGGAAGAGTTTATTGATACAAAAGGGAGCAAGTAAAAATTAACGGATTTAAAATTTTATTTTTTTTAGAAACTTAAAATTAAGTCTCATTTTTACCTTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTGATACAAAAATATAATACTATGCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 700-71 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNCE01000014.1 Mycoplasma testudineum strain BH29 NODE_14_length_3367_cov_45.7185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 699 36 100.0 30 .................................... CCAGTTTGACCAGCTTCTCCTTTTGGGCCT 633 36 100.0 30 .................................... TGTGTAATTCATTTTTAACTTCTTTCTGTA 567 36 100.0 30 .................................... TTGACATTTTACTGAAATTCAAACATTTAT 501 36 100.0 30 .................................... GAAATGTTTCGGTTTCATAACTTTTTTCAT 435 36 100.0 30 .................................... AAGCCGGGTATTGTTGGAACTTCGTTTATA 369 35 97.2 30 .......................-............ ATTATAACCAATTAGCTGGTATAACCATAG 304 36 100.0 30 .................................... TAATGAAGATGCAAGAAGGCACCACTTTGG 238 36 100.0 30 .................................... ATACATTTTGTAAATGCATGGCAACAGCTT 172 36 100.0 30 .................................... TAACTATTGATGTTGTAAGTATTGATAACT 106 36 83.3 0 .............................GGG.GCT | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.0 30 GTTTTGGCATAGTATTATATTTTTGTATCAATAAAC # Left flank : CATAGTATTATATTTTTGTATCAATAAACACAATACTAAGGAAACCAGAACGACAGCCGGTTTTGGCATAGTATTATATTTTTGTATCAATAAACTTAGTCGTAATTTTTCCTTGTTCAGTCGTAGTTTTGGCATAGTATTATATTTTTGTATCAATAAACTTTTCGATAAGTAACTGATTCCTGTTTGTTGTTTTGGCATAGTATTATATTTTTGTATCAATAAACTTTTTCAATATAGGTTCGTTTAAAGTGTAAGTTTTGGCATAGTATTATATTTTTGTATCAATAAACTTAAAAACAGTCTACAAAATTCTCGAGTGAGTTTTGGCATAGTATTATATTTTTGTATCAATAAACTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAATAAACTTAAAAACAGTCTACAAAATTCTCGAGTGA # Right flank : TAACAAAAATTAACGGTCTTAGCAGAAAGGACCGTTTTTATTATGAAAAAAATGGAAAGCAATTTGATCGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCATAGTATTATATTTTTGTATCAATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 907-3251 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNCE01000014.1 Mycoplasma testudineum strain BH29 NODE_14_length_3367_cov_45.7185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 907 36 100.0 30 .................................... TTACACTTTAAACGAACCTATATTGAAAAA 973 36 100.0 30 .................................... AACAAACAGGAATCAGTTACTTATCGAAAA 1039 36 100.0 30 .................................... TACGACTGAACAAGGAAAAATTACGACTAA 1105 36 100.0 30 .................................... CGGCTGTCGTTCTGGTTTCCTTAGTATTGT 1171 36 100.0 30 .................................... AAGAGGAATATATTAATCACTCGTGATATA 1237 36 100.0 30 .................................... TCACTCGAGAATTTTGTAGACTGTTTTTAA 1303 36 100.0 30 .................................... TTACACTTTAAACGAACCTATATTGAAAAA 1369 36 100.0 30 .................................... TACCTCGGTAGCAGTAAGTGCTACATCGAA 1435 36 100.0 30 .................................... ATTATTTATTCAAAAAGCGTTATTTTTGTC 1501 36 100.0 30 .................................... TAAAGGTAGTTTATAAAATTCTCGAGTGAA 1567 36 100.0 30 .................................... TAGGTATAAGTGAGTGGTATATCCCTGCCA 1633 36 100.0 30 .................................... GAATCTTACATCCATAATAAAAAAGGAAAA 1699 36 100.0 29 .................................... GCCGCAGGGCTATTTTTTTTTTGAAAATT 1764 36 100.0 30 .................................... GGGATTCGAGTATTATGCATATAACCATAT 1830 36 100.0 30 .................................... GTATGTCATCAATTGGATTTGAGAATGTTA 1896 36 100.0 30 .................................... ATGACGATTTTCAAGTAGCAGATTTAGTAG 1962 36 100.0 30 .................................... CACACACAAACGCAATTACTGACGGGAAAA 2028 36 100.0 30 .................................... AATCGTTTAGGTTGTTAATGTAGGTTAGGC 2094 36 100.0 30 .................................... ATTATTAACTCAAAAAGCATTATTTTTGTC 2160 36 100.0 30 .................................... ACGCCCTGATTTTTGAGGTTGTTAAGAAGA 2226 36 100.0 30 .................................... TGCGTTTTCGTACTCGGTAGTCAGTTCGAA 2292 36 100.0 30 .................................... AATATTTAACTATTAAACAAAATAATACTG 2358 36 100.0 30 .................................... TTTCTACTAAATCTGTGACTTGAAAATCGT 2424 36 100.0 30 .................................... TACTATGTCGGACATCCTTTTCAATTCTAT 2490 36 100.0 30 .................................... TATTCGACACTAACAAATACCTCAACTACT 2556 36 100.0 30 .................................... TGAAATAATAAGTAAAGGAATAACTAAACT 2622 36 100.0 30 .................................... AACCTCTGAAATTTTGGAAATTGAGGAAGA 2688 36 97.2 30 A................................... TGCGTTTTCGTACGCGGTAGTCAGTTCGAA 2754 36 100.0 30 .................................... GCCAATTGGGATGATTATTTCGTATAAAGA 2820 36 100.0 30 .................................... TAAACTACGGCTGTCAAAAAAATACACATT 2886 36 100.0 30 .................................... TCATTTTCTTCTCCTTTACTTATCTTATAA 2952 36 100.0 30 .................................... TTTTTAATTTCTTCGTTATTTATTTTCATT 3018 36 100.0 30 .................................... TCTGGAGCAAATATTTAACGACCTGATTTA 3084 36 100.0 30 .................................... TATATCACAGCTGTCGATAACGCAATAATT 3150 36 100.0 30 .................................... CTGAACTAACTCTTGTCTCTTTAGTATTGT 3216 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.9 30 GTTTATTGATACAAAAATATAATACTATGCCAAAAC # Left flank : GATACAAAAATATAATACTATGCCAAAACATGAAAAAAGTTATGAAACCGAAACATTTCGTTTATTGATACAAAAATATAATACTATGCCAAAACATAAATGTTTGAATTTCAGTAAAATGTCAAGTTTATTGATACAAAAATATAATACTATGCCAAAACTACAGAAAGAAGTTAAAAATGAATTACACAGTTTATTGATACAAAAATATAATACTATGCCAAAACAGGCCCAAAAGGAGAAGCTGGTCAAACTGGGTTTATTGATACAAAAATATAATACTATGCCAAAACTCACTCGAGAATTTTGTAGACTGTTTTTAAGTTTATTGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGTTTATTGATACAAAAATATAATACTATGCCAAAACTCACTCGAGAATTTTGTAGACTGTTTTTAA # Right flank : CTCATTTATTAAAAAAACTCAATTTTTTAAATTGTGATATGAAAGCGACTGTTTTATTTTAAAGGGTGAAAGTGAGTAAAATTTATAAATGAAAAAATTAACAGTTAGAGAACACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTGATACAAAAATATAATACTATGCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //