Array 1 1217-990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVI010000025.1 Campylobacter concisus isolate B124_Small-clear, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1216 29 100.0 36 ............................. CTTGCTGGGCAAAGAGTTGAACAATTTTGTTAATTC 1151 29 93.1 39 ..................A..A....... CTAGCCAACCACCAAGATCGCAACAGTAACCGTTACAAC 1083 29 100.0 36 ............................. TTCGCCAAGCGCACTTAGAATTGTCATCAGGCGACC 1018 29 82.8 0 A.............TA..C.......A.. | ========== ====== ====== ====== ============================= ======================================= ================== 4 29 94.0 37 GTTTTAAATAATGTATTGGAAGTTTAGAA # Left flank : CTTTATAAAATATCTATTAAAAGGCAAAGTAGATAATAGACTATATATATTAAGC # Right flank : ACGGCAACAATATGCCAGCCAAAACTTCGCACGTTTTAAAAAAAACATTTTGATTGACAACCCTTTGGCTTAATTGCCCTCTATCCGCCTCATCTCTTTTTTTACCATATCTCCAGTAGCGTCTGCATAGATCATAGTTGTCTGTATCTTTTTGTGTCTAAGAGCCTTTTGGATAACGCCTAAATTTGTATTTTTCTCAACCATATTCATAGCAAATGAGTGCCTTAATATATGGCAACCCCTTTTATTTACTATGCCACATTTTCTGTATATGCGAGCTAGTAAAGAATAAACGTTTTGTCTGGAAATTGGTTTATCGCTACATCCACTGGTAAAGATATAATTTTCAGGGAGATTAATACTTAATAATCTCTCAAAATCATCTTTTATATGACTTTTTGGTATATAAGCCGTTTGGTATTCTCCACCTTTAGCTAGTATATTTATATCGTAAAACTCGCCGTCATCGCTCTCTTGAAAGTCACAAAATTTTAAATTTA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATAATGTATTGGAAGTTTAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 123261-122907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVI010000002.1 Campylobacter concisus isolate B124_Small-clear, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 123260 30 100.0 34 .............................. GGCTTTTAGGCTCGGTATCAAATTGATGAGCTAA 123196 30 100.0 35 .............................. ACAAGAGGATCTAAATCATTATTGATAATCTCAAA 123131 30 100.0 36 .............................. ATAATTTGACAAGAGCCACCATTTGGCGGACTTCGT 123065 30 100.0 36 .............................. TAGCTTTTGATTTGTAAATACTCGGCGTTATATTTA 122999 30 100.0 33 .............................. CTCTCTCCGCTTGGTCGGTATGCTAAAAACAAG 122936 30 96.7 0 ..................A........... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAACCTTCACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGTGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTTGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGTAAACAAGCTCAAAAAGTGCATCTGCGAGGATGCGCCTTATGAAGGCTTTAGGTGTGAGTAAAATCGCATTTTAGTAAAGCGTTTTTTAAGATTTTAGAATGCTTTAAATTTAGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGCCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : AAGACAGAAGCGACAAATTTAAAAGCCAAAGATTTTCAGAGAAGAGATTTAAATAATAGATCAGATAAATAATAATTGCTATCTTGCAAAGATGTATCAAACTGATGATAATATAGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAATAAACACAGCAAAAAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGTTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //