Array 1 86491-84822 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000001.1 Clostridioides difficile strain FD113 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 86490 29 100.0 37 ............................. TCTTTGCTTTTTGCATTATTTGTGCGGAACTTTAAAT 86424 29 100.0 37 ............................. TTTTTAACACGAGATTATTTGAGTTCAGCAAAAGAAA 86358 29 100.0 36 ............................. GAAATTTGACTACTTCCTACGATATTTTCTTTGCTC 86293 29 100.0 37 ............................. TCCTTATATTTCGTCTTTTCTTTCATCTACAAGAACA 86227 29 100.0 38 ............................. GTATATATTTAAGTTCTTTTGTTAATCTTCCAATTAAA 86160 29 100.0 36 ............................. CTTTTTAAGTTTTTCCACACAATCATATGGTTGTGG 86095 29 100.0 37 ............................. TCGGAGTTCTTGCAATAGCTTCTCCTTTGCATTTTCC 86029 29 100.0 37 ............................. TTTTCTTTTAGATATTTTTTATGTGCTTCTATATCTA 85963 29 100.0 37 ............................. TAGAAATACAATTCGGAACTTGTTTCTGTTGAATTTT 85897 29 100.0 37 ............................. TAACAAACCTTGTTTTTCCCACAAATCGTATGGAATT 85831 29 100.0 37 ............................. TCTACAATCGCTTTCGCCAATGCTGCACCCATTTTTT 85765 29 100.0 36 ............................. ACATTAGTAGCAACTTTACCATCCCAATCATAAGAA 85700 29 100.0 36 ............................. CTTGCTTGGTAAATCATAATACTCAATATCTAAAAT 85635 29 100.0 37 ............................. GATTTAGATGTCTATTTTAAAAATCGTTCTGATAATA 85569 29 100.0 36 ............................. CCTTTTGCACCTTACACTCTTATAAGACAGATAAGA 85504 29 100.0 35 ............................. ATAGATAAAAAAGTAGAGTTTATAATATCTGGAGA 85440 29 100.0 39 ............................. TTGCGTCAATACTTTTTTTGAAAGAATTTACGTGGTATA 85372 29 100.0 37 ............................. AGTTTAGAAATAGCGCATAAAATCTCGCTCGAAACAG 85306 29 100.0 37 ............................. AAGAGGAATTAATATAAACTGGGAAAATCATAAAATT 85240 29 100.0 37 ............................. TCTTTCACCCCGAAGACCTCTTGTTTTAAATTAAATT 85174 29 100.0 35 ............................. CTGTTTTTATAGTAGTTATAGTGACTATACTTGAT 85110 29 100.0 36 ............................. TCATCATAACATTTCGTAGGAATATAAATAGTGTTT 85045 29 100.0 37 ............................. GAATTAAAGTGTATAGATATGTCTAAATCAACTTTAG 84979 29 86.2 36 ......................GA...GT AGAATATTAGCAATATCAACGAGTGTTTAGAAACTT 84914 29 75.9 35 ............TA...CA....A...GA TTGTAGAATCAACAATAGCATATACTAAATCAGCA 84850 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 26 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5427-3814 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000106.1 Clostridioides difficile strain FD113 sequence106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5426 29 100.0 36 ............................. TCTACAATCAACTTAGCAATACCTTCATGACCTAGT 5361 29 100.0 39 ............................. TTTCTTAATCCTCCTCGTTTTTCGCAAAAAATAAGAATC 5293 29 100.0 38 ............................. TAATTTTCTGCTGAGTCAACTTTAGGTGATATTTTCAC 5226 29 100.0 37 ............................. TCTAAAACACCCATTCTATACGCATATTCTTTTTCAA 5160 29 100.0 37 ............................. GCTAGAGGGGCATCTTTGAGGATTTTAGGAAAATTAG 5094 29 100.0 37 ............................. TATGTAAGCAGAGACAAAATAGAAGTTGATTATGTGC 5028 29 100.0 37 ............................. TAACATTAGGGTTTTCTCTTGTTATGCCCATTTCATC 4962 29 100.0 37 ............................. TTCATAGACCAAGCGTTCTGCTTACACTTAATAGAAA 4896 29 100.0 37 ............................. TGTATTTGTCTAACACGATACAAAGCAAAAAATAAAG 4830 29 100.0 37 ............................. TCCGCATATGGAATGTAAATCCTAATGGTACCAGAGG 4764 29 100.0 38 ............................. GACGCAACAGCAAGAGTTGCAATAACATTGACAACCTC 4697 29 100.0 37 ............................. CTATGTCTATATGTTTCTTAATAGTATAAACTCTTAT 4631 29 100.0 37 ............................. CTAAATCTAATAGCATATTCAAGATGTTTTTCTTCTC 4565 29 100.0 36 ............................. ATTCATATATTAGATTTAATTTTCCTAATAAAAGTA 4500 29 100.0 37 ............................. ATATAAGAGCTTATTATACTAGAGCGACTTGGGATAG 4434 29 100.0 35 ............................. CTGAGAAGCGCTGTCACAAAACACTGTGTAAAAGT 4370 29 100.0 37 ............................. ACAACTCCTGCTATAATTGGACCTATTATACTCCAGT 4304 29 100.0 37 ............................. GGAACTTATTATGGAGCTTGGAGAAACGGGCCAAGCG 4238 29 100.0 37 ............................. GCTCTTGTCGCAGTTGCTCCTGAAATTATTGATGTTG 4172 29 100.0 38 ............................. ACTTACTTACAACAGCAAATTTATCACCTATTTTAAAG 4105 29 100.0 37 ............................. TGTTTATTATATTATCATTGCGTCACCTTTGCGTCAA 4039 29 100.0 37 ............................. ATTTTTTTGAAAGAATTAAGTGAAAGTATAGAAAATT 3973 29 100.0 37 ............................. TTTACAGAAACTATAAGACTATCTCCTTTTTCTAACT 3907 29 93.1 36 ...............T....T........ AGCGCATCCGCTGCGTCTTTAGCTGTTTTTGATGTA 3842 29 75.9 0 A.....T........T.....T.CA...C | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 98.8 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : GGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTAGTATAATAGTTTACTTAATTAGTAAATTAATTAAAGCCAAAAAAGCAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGTTCGATTTCTTGAACAAAATAGGGCTTAAGCATTGAAATGTAAGGTATTGAGAGTATATGATAAGCATTATCATTTGCACTACTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACTTTTTGGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATTATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAACGGAAACTGCTATGAACAAAAGGATTACAGTTAGATTAGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATAGCATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCTTATGACGTATACTATCGTATATCAAGTATAGTATACGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAAAATTATGAAAAATGAATTAATGATGTTTGAAGAAAAGAAAGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 6899-6078 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000106.1 Clostridioides difficile strain FD113 sequence106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 6898 29 100.0 38 ............................. ATAGTTTTCAAAGATGGAAATATGAACGAATGGTTAAG 6831 29 100.0 36 ............................. TGACTCTGCTTATAGCTTTATTAGTCTGCTCTCTAC 6766 29 100.0 36 ............................. TGATAAAATGACTATAATTAGAAAATTAAAAGGCTG 6701 29 100.0 37 ............................. TTAATTACCTTCAAAATTCATATATTTTAAAACTTCC 6635 29 100.0 35 ............................. ATTCAACTTGGATTGCTTTTTCAAATTCAGCTAGA 6571 29 100.0 42 ............................. AAAAAATAGAAATGAGGTGATAAAGTTGGCAGAACAACAATA 6500 29 100.0 36 ............................. TCATATCAGAATCATTCGGAGTAAATCCGAAACTCA 6435 29 100.0 36 ............................. ACAAAAACATCACCAGAAGGAACTCCTATTAAATCA 6370 29 100.0 37 ............................. TTGCAGGAATGTCTGTTGCTATTTCTAATAATAAGGT 6304 29 100.0 37 ............................. AATTTATAGAAATTCTTATAGCATCAGTTGTTTCTAT 6238 29 100.0 37 ............................. TAACATATTTTTCCAATAGATTTAGTTTTTTATTTAA 6172 29 89.7 37 ......T.........G...T........ ATGTATATCCCAGCAATACTTTTTAGTTTAGACACTA 6106 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ========================================== ================== 13 29 97.9 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : GCGTTATATGAACTAAAACAGAATAGCGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAAGTATTCTTAGGGAACAACAGGAGAGAGAAAATAAGTAAAATAAATAGATAAAGTACTTGGATATTATGTTGTTTCAAGTGTTTTATATGGTGAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAATACTTGAAATATAAGGCATTGAGAACGTATGATAAGTGTTATCAATTGCACTATTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGG # Right flank : TAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAGTTGAAAGTAGGTGATTATAACGTAAAAAGTAATAAACAGGTAAAATATGTAAGTAATATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTAGTATAATAGTTTACTTAATTAGTAAATTAATTAAAGCCAAAAAAGCAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 56348-56575 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000014.1 Clostridioides difficile strain FD113 sequence014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 56348 29 100.0 38 ............................. TAAAAGCTCTCTAATTGCTTTTTTAAACTTCTTTTCAG 56415 29 100.0 37 ............................. AGTTTGATTATCTTCTCATCATTTGGTATAACATATA 56481 29 100.0 37 ............................. ACGAGTTGTCATGATGATGGAGACACAAGTTTTACAG 56547 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 TTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGTTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATATAGAAGCTTTGCAGTGAGCGGTATTTGTGATAAAATATGGCTTAACACTTGAAATGTAAGGCATTGAGAACATGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATAGATGTAAGTATTGAAAATACTCAATTTATTTTGGG # Right flank : TTTTAAAACTAGCTCTTCTGTACTAACACATACATAAAGTGCTACTCTTAACAACATTTTACCTTCCCCCTTATTGTATATTTAAGAGCAGCTGAACGGCTCTTAAATATACTATGAATTGTTACAAAAAATTTGCATTCATAATACTAAATCTTGGCTCAAAAAATATCACATAATTATCTAGAGTGGCTGAAAAACCATATTTACTTTTATAACATTCTAAGGCTTCATTTAGAAACTTTTCAGTTACATCAAGGTATTCTGTCATTTCAGATATAGTCTTACAACCAGCATTAAAACTATCTATTATGCCTTTAAGACCAATTAACTTATTATAAGCCATTAATCTAGCTTTATATTCTTGTTTACTATTTTCAATTTTATTTAAGTCTAAAATATTGCCATATGAAGTATAATGATGCCCTAGTTCTTCTGCTAACACACAAGCTTTTTCACTCATATTATTAAGTGTATTTTTATTTAAAGCTATTCTATTATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 68843-70058 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000014.1 Clostridioides difficile strain FD113 sequence014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 68843 29 100.0 36 ............................. CTTGTAAAATCTCTTATACTAGAAAAATCTAATCCT 68908 29 100.0 37 ............................. GAGATTATCAATGTTGTTGCAACTCTTGCTGTTGCGT 68974 29 100.0 37 ............................. TTGCCTACCTTATGAGTTCTCTGTTTATTTTTAACTT 69040 29 100.0 37 ............................. AATTTGAACTTGATGACACAGTAATAATGTTTAAAAT 69106 29 100.0 37 ............................. GAGATTGTTAGCGTTGTTTCAACTCTTGCTGTTGCGT 69172 29 100.0 37 ............................. AAAATTATATCGTTAAAAACATTAATAAGCACAATAA 69238 29 100.0 40 ............................. TGCTCATTAAATCAGATTTATTAAATTCTCTGAATTTTTC 69307 29 100.0 37 ............................. CCTTTCATTAGTCATTTTTTGCATAAAAAAAAGAACT 69373 29 100.0 37 ............................. TCAGGATGAAACTTACTAGGCAAATCATAATACTCAA 69439 29 100.0 36 ............................. ACCCTTCGTACGTTCATGCGTACGACTGTACGTGTA 69504 29 100.0 37 ............................. CCCAAATGTATTTATAGCTGTAGCTTTTATTGCATTC 69570 29 100.0 35 ............................. GTTAGTGTATGACCTGCTGTTACTGCTACTCTCAT 69634 29 100.0 37 ............................. TCAAAAATATTTATATCGAAATCTTTGAATTGACATT 69700 29 100.0 37 ............................. CCAACTAACTCTTCATAATCCATACTCGTTAACTTTG 69766 29 100.0 37 ............................. ATAAGAGTGGTTTAAAAAAATAGTTTTTTAAATCAAT 69832 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 69898 29 86.2 37 ......T.........G...T.......G TTGTTGAAGTCGTCGAATTAGAAAGTAGTTCAAAAGT 69964 29 82.8 37 ......T........AG...T.......G ATAGATGCTCCCCAACATAAAATACCTTCAAAGACAG 70030 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ======================================== ================== 19 29 97.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCTAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 44473-44828 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000024.1 Clostridioides difficile strain FD113 sequence024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 44473 29 93.1 37 ...............T.....G....... ATAGAAACACAAGCTTCTAAAGTTTTAGAAAATTTGA 44539 29 93.1 37 ...............TA............ CTACTTTCATTTACTGTCCTTTTGACAGTTGTTTGAG 44605 29 100.0 36 ............................. TTTGATGAAGCTTGTAACTCACTTGATGCTTTTTCT 44670 29 89.7 36 A..............TA............ AGCAATTGTAAAACTAAAAGATGAAGCTAGTCCAAC 44735 29 93.1 38 A................C........... CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 44802 27 79.3 0 A..............T....-.-.A...A | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 91.4 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AAGAATTTATTTTAAGCTTTGGAAGTCCTATTTCATCTCTTCCAAACCCTATGAACAGCCAAGTATGTGAAATGGTTTATAAAGGGTTAACTAAATATAGAGAAAACAATGGTAACAATAAAAAAATTACAATAGAAGATGGAAGTATACAACAAGTAAAAGGATTAAAAGAATTGTTAGATATAGGAGCAATAACAGAGGAAGAATTTAATAAGAAGAAAAAAGAATTATTGGATTTATAACAAGAAAAAATAAATAAGTATAAACATACAAAGCACTTGGATATTATTTTGTTTCAGGTGCTTTGTTTATTAAAAAATGGTATAATATAGGTAAGAGTTTAGCAGTGTCCGATTTTTTAGAATACTGCTTGTAGTGATTGAAATTACTATATTACAGGTATATTTTATGAAATTCCAAAAAAACACTACTCATGGTTCACTGCAAATTTAAAAGAGTTGTATATATGTAAGTATTGGAAATGCTCAATTTATTTTGGG # Right flank : AACTAAATAAACAAAGAAAGCACTTACCAACATGTAAGTGCTTTTGTTTTGCTCAAATTTGCTCAAAATGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGAATAAGTTATTGACTTTTGAGTTCCAAAACTATATAATTTAATTATGGAACTCAAAAGTGAGGTGATAACATGAGTCCTAAAAAAATAGGAAGACCTGTTGTAGGAAGCCCTAAAACTAATGATATTAAGGTTAGAGTAGATGATGAAACTAATGAAAAATTAGATGAATACTGTAAAAAAAATAACCTTACAAAAGCAGAGGCTATAAGACAGGGAATCCATTTACTTTTAGAAAAATAACAAAAATAGAGCATTCTCCCCGACCAAAGTTTGAATGCTCTATTTCCAACAAAGAAGTAATCTTCTATATGAAATATTTTATCATATAGAGAAACTTCTTTCAAATTAAATTTAGGAGGAGTATGTATGATGAATAACTTACAAATATTTAAAAATG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 39778-41411 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000027.1 Clostridioides difficile strain FD113 sequence027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 39778 29 100.0 38 ............................. TCTAAATACACCCCTTCACTTAATCTCTACTTTGAAAT 39845 29 100.0 36 ............................. TACTGAAGAGTACATTGTTTCTCATGTTAGTTTCTT 39910 29 100.0 37 ............................. AAAGTTTTACGCATTGTATGTGTGCCTAGATTATCTA 39976 29 100.0 37 ............................. ATGCACGAAAAGCCTTTTAAGTCTGGTAATTCTTCGT 40042 29 100.0 37 ............................. TGTACCTACCTCGGTTCACATATTTTTCTTCAACAGC 40108 29 100.0 37 ............................. ACATTCGTCGTCATTTCTGCTTCATCACTTTGTAATA 40174 29 100.0 36 ............................. ATCATAAGAACCCGGAATATAAGGAAGATCATAAGC 40239 29 100.0 36 ............................. CTCAATCAAAAAATTCTTGATTCACGTAAAAGACGA 40304 29 100.0 37 ............................. TTATATAAGCACTCCCTCAATAGCTTCCTTAAGTATC 40370 29 100.0 37 ............................. ACAAATATATACTCATCATTTATACGCTTATATCCTC 40436 29 100.0 38 ............................. CTAGCAAAATTTGATAAAAGGTACTATTATTGTAGTAT 40503 29 100.0 37 ............................. AGGGGAATTATCTCCACGCATGTATATAAGGACACTT 40569 29 100.0 37 ............................. CAAAACGAGGTTGAAAAAATAAACGAAATTGAAAAGG 40635 29 100.0 37 ............................. TTCAGCACCTAGGTCAAGCATAGATTTTGCAACTGGA 40701 29 100.0 37 ............................. GTTGATTTAGCTGCCATATCTATCTTTTCAGCTTCAT 40767 29 100.0 37 ............................. CCGTTTATGCTATAATTAGCTTAATTAAATTTTTTAA 40833 29 100.0 36 ............................. AAGAATTTGTAAATAATGTAAAAGATATAAAAAATA 40898 29 100.0 37 ............................. AAGGTCTACTTCCTGTTTTGAATGATTTGGCAAATAG 40964 29 100.0 37 ............................. TTCATATTCCAAACATTTTGCTTACACTTAATCGAAA 41030 29 100.0 37 ............................. AGGAAACGTTGAAACGGCAGTTGTTTCACCTTTTACT 41096 29 100.0 61 ............................. TATTAACTATGTGGTATGTAAAGATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 41186 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 41253 29 79.3 36 A..............AG...T......GG AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 41318 29 86.2 36 A..............AG...T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 41383 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ============================================================= ================== 25 29 97.2 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : CTAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17574-16357 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000029.1 Clostridioides difficile strain FD113 sequence029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 17573 29 100.0 37 ............................. CACTCCTGTTTATGTTATAATAATCTTGGATAAAAGC 17507 29 100.0 36 ............................. AAACTTTTGGTGTCGCTTTTATACCTAATTTATCAA 17442 29 100.0 37 ............................. TTTTTTATGCAACCCTTTTTTGGGGTGCAGTTGCGAG 17376 29 100.0 36 ............................. ACTTCTCGTATTATCTTATAAGCCATGACTCTGCTT 17311 29 100.0 36 ............................. TAAAATATTCTGGGATTTAAATCCCGATAATCCTAA 17246 29 100.0 37 ............................. CAGGACAAATTTAATAAATATGCAATAAGAGCAACTA 17180 29 100.0 38 ............................. TTTAAATATTATGAACTAGAAGAAAATGAAAAGAATAA 17113 29 100.0 38 ............................. TCAATGAAACAATGGTTACTTATTAAACTATGTGTCGT 17046 29 100.0 38 ............................. CCTTATGAATTTAGTTTTACTAATTTTAAAATAGTTAC 16979 29 100.0 36 ............................. AAAGATTATCAGAAGAATTAATACAGACTGAAGATG 16914 29 100.0 37 ............................. TGTTTATTATTTATAATATTTTCATTTAATTTATCTT 16848 29 100.0 37 ............................. TCCTTCAATCTTGATTAATCCTTCTTCTGTTATCCAG 16782 29 100.0 37 ............................. GCTGGTAAGTTTGATTTTATATCATGGTAGTAAGCAG 16716 29 100.0 37 ............................. CTTATAGTAACGTCCATTAAATAGCTATCTTTTGCTC 16650 29 100.0 37 ............................. GAAAAATTTATTTTAAATAAAAGAACTAGCGACTCAA 16584 29 100.0 38 ............................. AACGATTCAGTATCTTGTTGCAACCCTTGACCACTTTC 16517 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 16451 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 16385 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17858-18283 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000008.1 Clostridioides difficile strain FD113 sequence008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 17858 29 100.0 40 ............................. TATTCTATAAATGTGGGAACAATAAATATATATGATGCAA 17927 29 100.0 36 ............................. TAAAGAAGGGTATTTCGTACTTTTACCACTTAAACT 17992 29 100.0 37 ............................. CAATAATAGATATGTATAGCTTCTTAGTTGGATTAAA 18058 29 100.0 36 ............................. TATGCAGATGGAAGTGGTTTTTTTATATGTGGAAAT 18123 29 100.0 37 ............................. ACCTTCTAAATATATCATCATTTTCTTCTATGCACTT 18189 29 93.1 37 ...............A............T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 18255 29 69.0 0 ......C........AAAT....AG..TA | ========== ====== ====== ====== ============================= ======================================== ================== 7 29 94.6 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTGTTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTATCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATATGCATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 23546-24039 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIQV01000010.1 Clostridioides difficile strain FD113 sequence010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 23546 29 100.0 37 ............................. TCATTAAAATTATTAAATTTTATTTTTTTCATATCTA 23612 29 100.0 38 ............................. TAATGGTGACGCTAGACAAGCAGAAGTTATTATTATAT 23679 29 100.0 38 ............................. TAATTAATGGTGTTATTAAGTCAAATTTTTGATTTTGC 23746 29 100.0 37 ............................. ATTTTTGTAATATTATAGAATCATCCTAAAACAAAAG 23812 29 100.0 38 ............................. CATAAAGAAAATTCTTCTAAGATTGAAATATATAATAG 23879 29 100.0 37 ............................. GAGCTTCTATTCCAGTCATATGTATCACATCCTTTTT 23945 29 100.0 37 ............................. CCTGCTGTTACATATGCTTCTAACATTTGTTGCATAC 24011 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGTAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGAG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //