Array 1 950028-952008 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051386.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 24350 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 950028 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 950089 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 950150 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 950211 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 950272 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 950333 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 950394 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 950455 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 950516 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 950577 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 950638 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 950699 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 950760 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 950821 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 950882 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 950943 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 951004 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 951065 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 951126 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 951187 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 951248 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 951309 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 951370 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 951431 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 951493 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 951554 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 951615 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 951676 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 951737 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 951798 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 951859 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 951920 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 951981 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 968141-968945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051386.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 24350 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 968141 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 968202 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 968263 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 968324 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 968385 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 968447 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 968508 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [968550] 968550 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 968611 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 968672 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 968733 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 968794 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 968855 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 968916 29 96.6 0 A............................ | A [968942] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //