Array 1 1640271-1641561 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP046027.1 Neisseria brasiliensis strain N.177.16 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
   1640271	    33	  97.0	    32	................................T	TTAAATCCTCCTTTTTTGGCTAAATCGCGGAA    	
   1640336	    33	 100.0	    33	.................................	TAAAAACTGCTTTCAGGTGGCCTGGAACATGAT   	
   1640402	    33	 100.0	    32	.................................	AATTGCCCGATAACGGCTTCGAGTGTATCGGC    	
   1640467	    33	  97.0	    33	................................T	GTGTCCAGCGGTTCGCCATCGTAGGCGTCGATG   	
   1640533	    33	 100.0	    33	.................................	AAAACGACTAGGCTTGTGGTATCCAGTCCGTAA   	
   1640599	    33	  97.0	    33	................................C	ACTCGGAAACAGGGATAAACGGCGCAATCGGGT   	
   1640665	    33	  97.0	    34	................................G	TTTGGGAACGCTAGACGAAGTTATCTGTATGGCA  	
   1640732	    33	  97.0	    32	................................G	GGAAAGATGGCAAGTGGTATTCCCGTGCTGAA    	
   1640797	    33	 100.0	    33	.................................	TAATGTCCGCCAAAATCCACGACGAAAAGCCGC   	
   1640863	    33	 100.0	    32	.................................	TTATTGATATTTACGATAACCCGCACGGCACC    	
   1640928	    33	  97.0	    36	................................T	TGGATGCGACCGCCGGTGATGATAACCGCCCTGCCG	
   1640997	    33	 100.0	    34	.................................	GATACAGGGTGTTTTTAATGCGCTCTACGCGGCC  	
   1641064	    33	  97.0	    34	................................G	TCATTCAAATCTGAATCTTCGTCATTCAAATCTG  	
   1641131	    33	  97.0	    35	................................G	AACGCACATGCGCTAAAGCGGTATGTTCGTCTAAA 	
   1641199	    33	 100.0	    34	.................................	AGAGCTGCTGGCGCAACGTAAGCAGAAGCATCGC  	
   1641266	    33	 100.0	    33	.................................	TTCTGTCCAGAAATGCCGCCCTGCTTTCGGCTA   	
   1641332	    33	  97.0	    33	................................G	AAGAGGAAAAAGTAACCAGACCGCCCAAAGGTG   	
   1641398	    33	 100.0	    32	.................................	AAATGAAACTCGAAGACGGCACCGAAGTAGAC    	
   1641463	    33	  93.9	    33	C...............................T	TGTTTGAAAACGCAGTGGGTTAATCATTAAAGG   	
   1641529	    33	  81.8	     0	..............A.A.......A.....GTT	|                                   	
==========	======	======	======	=================================	====================================	==================
        20	    33	  97.4	    33	TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA	                                    	       

# Left flank :   TTAATAGGGAAAAGATTAATGTTAATGCTGATTACTTACGATATTTCATTGGAGGATGCACAAGGCCAAGCCAGATTGCGGCGAATCGCCAAACACTGCCAAGATTACGGCGTGCGGGTGCAGTTTTCGGTATTTGAATGTGACATTGCCCCCGATCAATGGGTCGTGCTCAAAGACAAACTGCTCAAAACCTACAACCCCGAAACAGACAGCTTGCGCTTTTACCATTTGGGCAGCAAATGGCGCAGAAAAGTGGAACACCACGGCGCCAAACCGGCGGTGGATATTTTCCAAGACACATTGATTATTTAAATCGCTGACCATTGGTTCTCATGAAATCATCAGGGAGTTAGCGATTGAGAAATGTTCTTTAAAAATGAGGACTTATTTTCGGTGAATGCCTTTTGTAGGAGTGTGCTATAATTTTTTCGGTTCTCTTGGATAACGCTAGCGAATCAGTGCATTATCCGCCTTGATTGGCAAGGGTTGTATAAGGGGCT
# Right flank :  TATCCAGTAACGGCGAAAAACCAAGCAGAATAAGTCAAGCACTCCCGATACCCCTAGAGGAATTAAATCCCTATTAAAAAGCCTCGTATCATGAGGCCTTTTTATTATCGAGTTAATCTAAGTTTGAACTAAGTTAAAGTATGCTAAAAAAATCATGCCGTCTGAACGTGATTTTGGTATATGATTTAGGAATGAATGCCATTTGATTTCAGGAGAAAAATCCATGTTCCAATTTGCCCATCCCCAACAAACTCCGCTGCGCCAAGCGGTGACTGAGGCTTATCGCCGCGATGAAGTCGAAGCGGTGAACGATATGCTGCAACAGGCGCAGATGACGGGTGAAGAGCGTCGTGCTGCCGATGATTTGGCGCGCCGTTTGGTGACGCAGGTGCGGGCGAGCCGTACCAAAGCCAGCGGTGTGGATGCGTTGATGCACGAGTTTTCATTGTCGAGCGAAGAGGGTGTGGCGTTAATGTGTTTGGCGGAGGCTTTGTTGCGCA

# Questionable array : NO	 Score: 5.82
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.30,-3.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//