Array 1 282901-283401 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIS01000010.1 Clostridium botulinum strain 126-07 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================== ================== 282901 30 96.7 36 ................G............. ATGTTTCCCATAGCAGCAGCTATGCTTTTTTCTGGT 282967 30 96.7 34 ................G............. CCTATAGTAAGTACAACTCCATTTGATGTACCTA 283031 30 96.7 36 .........C.................... GCAGTTTTTATAGCATTATCCATATTCCCATATGCT 283097 30 100.0 35 .............................. GCGGTGTATACGAAATTACAAAAGAATAATGAAAT 283162 30 100.0 36 .............................. AAGATGAAAACTTCCTAAAAGATAATTATTTAAAAA 283228 30 90.0 114 ................G...........GC AGGGACCCAAGTCTTTGATTTGGTGTGAATCGATTACTACTTGGAGAGCAGCAGTAGGAGTTTCATAAAAAATTAAAGATTTATAGTTTTTAAAGTTAGGTATGACTTTCAAAT 283372 30 80.0 0 T..C........T.......A.......GC | ========== ====== ====== ====== ============================== ================================================================================================================== ================== 7 30 94.3 49 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : GGACCTGGGATAATCAAGGAAACGTTGAGGATGTTGCAACAGGAAGTGCAGCTGGACCATTAGGTGCATATTTATATAAGCATAATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATATTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAAATTGAATTTGCGATTTTTTATTGCGCAATCCAAATATATTGTAAAGTTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTAGAGCGTTGACACATAAGGCTTATGGTAAGTTTTTATTTTATATTTGTAAAAAGCAAAACTACTTGGAAAAATTTCTTTAAAATCTTGTAAAATCAATGGTTGTATGATATCCTTGAAATTAAAGAATGGCTATTTTACTATG # Right flank : CTTATAGTTAAATTTGTGGTTAAAGAGAACTCTTATTCTTTTAAGTATAGGATTAGGAGTTTTTTATTTTAATCTTAATTTAATTATAGTTTTGGCATATATTAAAGATACATTGAAAGTAAGTTAAGTTTTTTATCTGTATTTTCTTTATATGTTTAAATACATTATTCTATGGTAATATAATAGGATAAGGAGAGTGAAAGTTATATGAAAAAGAGATTTAATGTAACTGGAACCTGTATACCAGAGAAGCATTATATGGTAGATATATCTAAAAAGCTAGATAGCATATTAAAATTAATAGATAATGAAGAGTATTTTATTATAAATAGACCAAGACAGTATGGAAAAACAACTACATTATATATGTTAGAAAAAAGATTGAATAAAATGGAAGAGTATTTACCTATAAAAATAAGTTTTGAAGCCATAGATACGGAAGGATATAGTGAGGCTAAAAAATTTTTAAGTAGCATAATGATGCAAATAATAAATTACTT # Questionable array : NO Score: 4.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-1.31, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 285406-285964 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIS01000010.1 Clostridium botulinum strain 126-07 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 285406 30 100.0 36 .............................. GTATGATTTTCTAACTTCTTTTGTAATATTAATATA 285472 30 100.0 36 .............................. TTGACTTCCGAAACTATATTTATTATATAGCCATCA 285538 30 100.0 36 .............................. ATTCATTTATTGTACCAGGATATAAATTACTATATC 285604 30 100.0 36 .............................. TTATAGTAATAAGAAAGTGTTTTACTTATCATTTCA 285670 30 93.3 37 A............G................ AAAGGTAATAGCTTTCCATTATCTAAATCAAGTGAAA 285737 30 96.7 36 ...............G.............. CAATAAATAATTGTATATGTACCATCTTCTATAAAT 285803 30 96.7 35 ...............G.............. GTACATGGACCCACCTACTGAAAATCAGTACATTA 285868 30 100.0 36 .............................. TTGCACGTGCCATAAGGGGAATGATATCAAACTGTT 285934 29 80.0 0 ........A........T..A.-.AA.... | AC [285939] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 96.3 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCGGATTTGCATTTAAAGAAGTAAAAGCTGGAGAAGAAAAAAGATTTGATATAGTAATAACCTATAATAAAAAAATGTACATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGATACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGGAGAAGTAGAAGAAAACTATATAGGTATAGAAAATAATAGTAAAAAAATAATACAGATTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAATCTAAACCTATTCTAGCCATTGAAATATAAGGCCTAGGATAGGTTTTCATTATGAAATTTTAAAAAACAAAATCGCTTGGAAAACTTTCTATAAAACCTTGTAAAATCAAGAGGTCTGTGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTAATGTGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCGAAGTTTTAGAATGGAATATGATGGGTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAGGGTGTATGGTATAATATAGATAAATTTGTATAAAGAGGTGTATAAATGGAATTATGGGAACTGATTGCAACAGTGATGTTGAAAGAAGACATATATTTTGAAGATTGTGGATATATAATAGGGAAAAACATAAATAAAAGTATGCTTTTGGATAAGGATTTAAAGGAAGTACATCCAAAGAAACAGTACAAAAATTACGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAAGACAGGTTGTATATTTTTAATATTAGAGGTTTAAGTAAAGAATTTATAGATAAAATAGAAACTTGCTTATGTAATTTAGAAAGTAATGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 299519-299749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIS01000010.1 Clostridium botulinum strain 126-07 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 299519 33 100.0 33 ................................. TACGAATTAATTTTTATATTAATCTTACCTTTA 299585 33 100.0 32 ................................. ACTGTACTCATAAAAAGTACACTCATATCAGT 299650 33 93.9 34 ..............................CT. ATTTTTACCCTAAGCTTGTCTTTAAGTCCCTCAA 299717 33 78.8 0 ........A......GA......C....GC..G | ========== ====== ====== ====== ================================= ================================== ================== 4 33 93.2 33 GTTGAACAGTAACATAGGATGTATTTAAATAAT # Left flank : CTATTTTACTATGCTTGAACATTAACATAGGATGTATTTAAATCATTATCTCCCTTACCTGCTTCTATTGAATATCCTGTTGAACAGTAACATAGGATGTATTTAAATGAAGATAAAGAGTTAAGAATAGAAAATAAAATAAAGTAACATAAGATGTATTTAAATGAAGCCTGCTCTGCTGTTATTCTCCCATTATAGTTATTGAACATTAACATGAGATGTATTTAAGCAGGGAACCTAAATCTCCGATTTGGCGTGAGTCGCTTACTCCTTCGAAAATTGGAGAAGGAGTTTCATTAATGAGCATGGTATATATAATTAAGTTTTCCAAGTGAATTAAAAATAAAAACCTATTCTAGCTATTGAAACATAAGGCCTAGGGTAGGTTTTTGTTATGTGTTTTTGAAAAATCAAAATCACCTGGAAAAATTTCTTTAAAACATTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : GAAATGCAATTATTTGATTTGGAATAATCATTTATATATGGCAATAATTTTTTGTTTAGTACTTCTTTGGATTAAGGTATGGGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAAACCCTATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTCTATATAAATTGTTAGATACTAATTATTTGAAAATTTATTTAATGAATCATTATCCTTAAATAAGTTTTTTAAGCTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAACTTCAGCGTTTGGTATAAGAGATAATAATACCACAGCATTTTTTTCTAAAAGTTCTTCAACTTTGTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAGATTTTTATTTATATTATAGTTAACAGTTATTTCATATGGCTCTTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 308185-308831 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIS01000010.1 Clostridium botulinum strain 126-07 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 308185 28 100.0 37 ............................ AGTCTAATGTATAAGTTCCATCCCATACCTCGTGTTG 308250 28 100.0 38 ............................ ATAACCATTGAATTGTTAAATTATATTCACTTATATAA 308316 28 96.4 37 ................A........... ATAAGTTTACTCCACCTTTTGCACCTTTTCCACCTAC 308381 28 92.9 37 ...............GA........... ATTATTTTGATGCTTTGGTTTGTATAAGTACTCTTTG 308446 28 82.1 117 .......CT..G....A....C...... GCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTGCTCATTCGAGGTGAGGAGAATGAGTTTCATAAAACAATCAAAGCTTTATTATTTTAAAATTAAGTATGCTTTTAAACT GA [308449] 308593 28 85.7 117 T.......T......GA........... GTAGCGAACCCAAATTTGCAATTTGGTGTGAGTCACTTACTCATTCGAGGCAACGAGAAGGAGTTTCATTAAATAATTAGACACTTAGTATTTCAAGTTTAGGTATGATATGAAAAA 308738 28 82.1 38 A.......T..G...GA........... ATGATAGTTAACCTGTTGTTTATATGAAGAAACATCTA 308804 28 85.7 0 ......T.A......GA........... | ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 8 28 90.6 60 GTTGAACAGTAACATAGGATGTATTTAA # Left flank : AAAAGGATATACAAAAGAAGCCGTAAATGCTTTAGTTGATTGGTGCTTTAGTGTGTCAGATATAAAGTATCTTATATTGTCTATTGATTGTGCAAATATCTCTTCTTGCCGCCTTGCGGAGAAATGTGACTTTGAATTATTTGAAAAAAGAACACCTATAGGACATAAGCAACCCAACATGGAAAGTGATAGTTACTTCTACTATAGAAAATATAGAAATCTGCCATAAATGTCATTATATTTATTACGCACTTTTCATATTTAACATCACAACTAAAAAAACGAACAATTTACTTAAGCACCGCATTATGCATGAATTGAATTTTTCCAGGTACAATAAATTTACAAACCTATTCAAGTTATTGAAACATAAGGGATAGAATAGGTTTTTATCATGTGTTTATGAAAAAATAAAATCACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATATGTATATGATATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGCAGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTCCTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAATTTCTATGCAAATTATTAAATTAATTTTAAGAACCTGTCTATTTTTAGGACAGGTTTTTAGTATTTAAAGGGGATAGATAAAATAGTTTTTTGTAGTTATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAATATGAAAAAATCTCATATAGCATTATTAGTGGTAATGTATATGGTGTTAATGGGAAGTTTGCCTAGATTTACGGGGTGGGCAACTATTTTTTCAGCAATTGCAGCGGGAAGTTATTTTTTAAAGAACAAAAAAGACTTAAAAGAACTAACTAGGAAGAAGAAAAACTTTATATTTACAGGTATAATA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-2.29, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //