Array 1 47-380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOF010000137.1 Cronobacter malonaticus strain MOD1_GK1357 cmalGK1357_contig_137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 108 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 169 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 230 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 291 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 352 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCGCTGACGAATACGCCGTTATTTATGTAACCG # Right flank : ATGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1375-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOF010000022.1 Cronobacter malonaticus strain MOD1_GK1357 cmalGK1357_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1374 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 1313 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 1252 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 1191 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 1130 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 1069 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 1008 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 947 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 886 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 825 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 764 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 703 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 642 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 581 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 520 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 459 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 398 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 337 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 276 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 215 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 154 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 92 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 30 29 100.0 0 ............................. | C [21] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : G # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29031-28147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOF010000022.1 Cronobacter malonaticus strain MOD1_GK1357 cmalGK1357_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29030 29 96.6 32 ....C........................ ATTACCAGGGGGGATATTGGGAGTATCTTCAG 28969 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 28908 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 28847 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 28786 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 28725 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 28664 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 28603 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 28542 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 28481 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 28420 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 28359 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 28298 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 28237 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 28176 29 93.1 0 ...........TT................ | G [28155] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : AAAAAGAGACAGTG # Right flank : CCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //