Array 1 8332-8727 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959321.1 Aerococcus christensenii strain KA00635 Scaffold223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8332 28 100.0 33 ............................ ATATTCTCCTTCAATCGGCGATCAGAAGACGTA 8393 28 100.0 34 ............................ CTATTAAGAAGCTCAACCCTGCTCTTGGATTAGG 8455 28 100.0 34 ............................ TGAAGACCCAAAAGTCACAGAAAACAATGTCGGT 8517 28 100.0 33 ............................ TTCAATCTCTTCAGGAGTAGTTCCCCTAATATA 8578 28 100.0 33 ............................ TCAAGGAGAAGCGGTTAATCCGCTTCATCCTGA 8639 28 100.0 33 ............................ AAAAGCTGAAAGATAAGCAATTGCTGAAATTAA 8700 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 7 28 100.0 34 GGATCACCCCCGCATACGCGGGAAAAAG # Left flank : CCCGCATATGCGGGAAAGGTTGACCTCTTCTTCACGCCTTTATTGTACCATAAATCACACCTGAATACGCGGGAAAAAGGCTGCGCTGCTGAGCTTTTTCTTTTGCGTTCGTTACCTCCTTTCTTACTTTTTTTTAGCTAGCATTAAAAAGTAGTCAGTTAGAGTCAAGTGATGCTCGGCTGCTTGAGCTTTAAAAAAGTCTTTTTCTTCTCTAGTAGCTCGTATGACTAGCCGTGCATCTCTGACACGCCCAGTGGCGGGACGCCCGCGTCTTCTTTTCTCCTCTTGCATATGCTTCTCCTTTCATGATATACTTAACTCAAGGGTAAGGGAAAGCGGTAAATGCCGCTTCCCTTGATTTGAAAGTTATAAAAAGTTTTGGATTAAGCTTACCAGCTCAAGTACTAGCTTGATAATCGCACTTATCAAGCTTAGTAAGTCTTTAAAGTCGGTAAGCTTTTTCTTTTTACCCTTCATAGCTTTCACCTCCTTCCCTTGAA # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATCACCCCCGCATACGCGGGAAAAAGCAAGGGGATACTCCAAAACGTTGATATAACAACAGGATCACCCCCGCATACGCGGGAAAAAGCATTAGTTGGCGAGTGGAACAGAAGGTTAATAAGGATCACCCCCGCATACGCGGGAAAAAGTTTTTAATCTTTCTTTTAGGCACTTTCACTTTAGGATCACCCCCGCATACGCGGGAAAAAGGCTTTAAAATCATCTAACGCTTGCGTTAGCTTGGGATCACCCCCGCATACGCGGGAAAAAGTTTCAGCTTCTCTATAATGGTTATAACCGAATAGGATCACCCCCGCATACGCGGGAAAAAGTAATTTAGATTTACATAATTACACGTTAAGTAAGGATCACCCCCGCATACGCGGGAAAAAGCCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCATACGCGGGAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 8828-10382 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959321.1 Aerococcus christensenii strain KA00635 Scaffold223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8828 28 100.0 34 ............................ CAAGGGGATACTCCAAAACGTTGATATAACAACA 8890 28 100.0 33 ............................ CATTAGTTGGCGAGTGGAACAGAAGGTTAATAA 8951 28 100.0 33 ............................ TTTTTAATCTTTCTTTTAGGCACTTTCACTTTA 9012 28 100.0 33 ............................ GCTTTAAAATCATCTAACGCTTGCGTTAGCTTG 9073 28 100.0 33 ............................ TTTCAGCTTCTCTATAATGGTTATAACCGAATA 9134 28 100.0 33 ............................ TAATTTAGATTTACATAATTACACGTTAAGTAA 9195 28 100.0 33 ............................ CCAACGAGTATACGAGCGTCCTCATGAAGCGGA 9256 28 100.0 33 ............................ GTAGCTCTTCTAAAGTGCCTTGAAAGCATCCCG 9317 28 100.0 34 ............................ TATCGGTGTACTTGTCTATACCTCCACCAGCTCC 9379 28 100.0 33 ............................ CATTAAAAGAATAGGAACTTTCAGTTTATGCCG 9440 28 100.0 33 ............................ GGTGTACCTTTTAGGTGGTGGGACGCTTGTTCA 9501 28 100.0 33 ............................ TCAATCAAAAATCGTTGCAATTGATCGAACAAG 9562 28 100.0 33 ............................ GCTGTTCTTGAGACTCTTCAAGTTTAGCTTTTG 9623 28 100.0 33 ............................ GCGGCAACTGATCGACTCACAAAAATATCCAAG 9684 28 100.0 33 ............................ GGATACGTCACGGGTTAATAACGCAATTTCGTA 9745 28 100.0 33 ............................ GTTAAAAGGAGTAAAACAATGGATCAAGCAATA 9806 28 100.0 33 ............................ TCCCCATTTAATTTGTCCGTTTCTGGTTGTATA 9867 28 100.0 33 ............................ CTCAAGAGGTGCAAGCGATCTTTCCAGATCTGA 9928 28 100.0 33 ............................ AAGAAAAGTTCGGATTGTCAGTTACAAAAGCTA 9989 28 100.0 33 ............................ TGTTCCCCATTTTTTGGATAATCTCTTCCAAAG 10050 28 100.0 33 ............................ TTCCCAACTAAATCTTTGTAAGGGGGGAACGAG 10111 28 100.0 33 ............................ CAATTTAATATGTGCCGTTTTAGAAAATGCCAA 10172 28 100.0 33 ............................ CACGGTTTTTTGATTAAAATTGACGTCCCCCCA 10233 28 100.0 33 ............................ CAATTTAATATGTGCCGTTTTAGAAAATGCCAA 10294 28 100.0 33 ............................ GATTTACATATATTGATGGGGCGGGTGTCACTG 10355 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 100.0 33 GGATCACCCCCGCATACGCGGGAAAAAG # Left flank : TGAAGGATCACCCCCGCATACGCGGGAAAAAGATATTCTCCTTCAATCGGCGATCAGAAGACGTAGGATCACCCCCGCATACGCGGGAAAAAGCTATTAAGAAGCTCAACCCTGCTCTTGGATTAGGGGATCACCCCCGCATACGCGGGAAAAAGTGAAGACCCAAAAGTCACAGAAAACAATGTCGGTGGATCACCCCCGCATACGCGGGAAAAAGTTCAATCTCTTCAGGAGTAGTTCCCCTAATATAGGATCACCCCCGCATACGCGGGAAAAAGTCAAGGAGAAGCGGTTAATCCGCTTCATCCTGAGGATCACCCCCGCATACGCGGGAAAAAGAAAAGCTGAAAGATAAGCAATTGCTGAAATTAAGGATCACCCCCGCATACGCGGGAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATCACCCCCGCATACGCGGGAAAAAGGTTAAAGGACGATCCTAATGGGGAGCGTGCCCAGGATCACCCCCGCATACGCGGGAAAAAGATAATTCGATCTCCTATTGGAAAGATTTAGGGGGGATCACCCCCGCATACGCGGGAAAAAGTTTCCTTGGTAAACATTTCTTTGATCCTTTCCAGGGATCACCCCCGCATACGCGGGAAAAAGTACCTAGCCATACAATCCCTAAAATGATATTTAGGATCACCCCCGCATACGCGGGAAAAAGACCACCCCCACCAATTTAATGTCATTTTGTCCGGGATCACCCCCGCATACGCGGGAAAAAGCTTTTATTACTGTGCCTAAAACATTCATAATTAGGATCACCCCCGCATACGCGGGAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCATACGCGGGAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 10489-11005 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959321.1 Aerococcus christensenii strain KA00635 Scaffold223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10489 28 100.0 33 ............................ GTTAAAGGACGATCCTAATGGGGAGCGTGCCCA 10550 28 100.0 33 ............................ ATAATTCGATCTCCTATTGGAAAGATTTAGGGG 10611 28 100.0 34 ............................ TTTCCTTGGTAAACATTTCTTTGATCCTTTCCAG 10673 28 100.0 33 ............................ TACCTAGCCATACAATCCCTAAAATGATATTTA 10734 28 100.0 33 ............................ ACCACCCCCACCAATTTAATGTCATTTTGTCCG 10795 28 100.0 33 ............................ CTTTTATTACTGTGCCTAAAACATTCATAATTA 10856 28 100.0 33 ............................ TAATTACAGGAGTAATTACATAGAGGAGTGATA 10917 28 100.0 33 ............................ AAAGAAATCATCATATAGCTTCAGCCAATAGTA 10978 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 GGATCACCCCCGCATACGCGGGAAAAAG # Left flank : GGATCACCCCCGCATACGCGGGAAAAAGTGTTCCCCATTTTTTGGATAATCTCTTCCAAAGGGATCACCCCCGCATACGCGGGAAAAAGTTCCCAACTAAATCTTTGTAAGGGGGGAACGAGGGATCACCCCCGCATACGCGGGAAAAAGCAATTTAATATGTGCCGTTTTAGAAAATGCCAAGGATCACCCCCGCATACGCGGGAAAAAGCACGGTTTTTTGATTAAAATTGACGTCCCCCCAGGATCACCCCCGCATACGCGGGAAAAAGCAATTTAATATGTGCCGTTTTAGAAAATGCCAAGGATCACCCCCGCATACGCGGGAAAAAGGATTTACATATATTGATGGGGCGGGTGTCACTGGGATCACCCCCGCATACGCGGGAAAAAGGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GACTAAAAAATCCCTATAATATCAACCTTGATTTCCAAATAGATCCCGAAGTTTATTCACTTCATTTATGAGTTTATCAATGAGTTCTGCATCTTTCAACGCTCGATGTGGAACTCTATCCTCTATATTGTAGCTAGCTAGTACCGTCTCCAATTTATAATTCTTCAAAAATAATTTCTCTCGTTTAACATATGACATGACATCATAAGTTTTATTATGTAATGGATTATGATTCAGTTGAATAAGATTGTAATTAATAAAGTTAATATCAAAATTTATATTGTATCCTATTATCGGTAGATCACCGATAAATTCAAACAACTTCTTCAATGCTTCCTCTAAATTTACTCCCTCTTTCCTTAACATTTCCTCTGTAATTCCAGTAAGTTCTTTTATATGACTAGGCAACTCTCTATCATGATTAATTAATTGATTAAAACTCGTTCGCTCACCATTTTTTACTTTAACTGCACCTAATTCAATGATTTGGTTAACTTCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCATACGCGGGAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //