Array 1 107528-111648 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPM01000002.1 Aggregatibacter segnis strain C2001002503 C2001002503_S3_ctg_596, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107528 28 100.0 32 ............................ CATTGAAGCTAATCGGTCTGCAAAGGCTATCT 107588 28 100.0 32 ............................ TATGCAAGCAATTTAAAATAGATAGTTCTGAA 107648 28 100.0 32 ............................ TGAAAAATTTGATGAGTTTTCAGAACGATTTT 107708 28 100.0 33 ............................ TTGGACTAAATAAACCTCGCAAGTTTAGCCCAA 107769 28 100.0 32 ............................ AGTTTTTGTTAATCGATCACGACTTTGTACTG 107829 28 100.0 32 ............................ TATAGCTCCTGTAGCTTTCATCTTTCCTTCGA 107889 28 100.0 32 ............................ CATTTACCATCTTTTAGTTCGTGGTATGCGGT 107949 28 100.0 32 ............................ TATTCGGCAGTGAAGGTTTTACAATTTTGAAT 108009 28 100.0 32 ............................ ACGCTCTTTTGCATCTCTTTCAGAGATTGCCA 108069 28 100.0 32 ............................ AAGCAAGCGCTTGATAAAAAAAGAGCGGAATT 108129 28 100.0 32 ............................ AAAAGAAAATAATGCCTTGGCTGCACTTTCCT 108189 28 100.0 33 ............................ TTATCGCCGATTCGCACACCCGATCGGACGACA 108250 28 100.0 32 ............................ TAGCATTAATGGAAGTAACGCAATCATCTTTA 108310 28 100.0 33 ............................ CTGTGGCATTAAATCCACGATCAACAGATACCC 108371 28 100.0 32 ............................ TGCCCCGTTAAGAATTGATACAATTATCCCTA 108431 28 100.0 33 ............................ AAAAAAACAAAGAACAAATAAAAGGGGCTTTAT 108492 28 100.0 32 ............................ TGTTATTGACGGTGCACAAATTGGAAACCAAA 108552 28 100.0 32 ............................ TATGAGGAAGACAAGGAGTTGATGTTCAAGCG 108612 28 100.0 32 ............................ AGTAAAAAATGACTAAAGGTAAACTTACAAAA 108672 28 100.0 33 ............................ TACTTTTAAAGGTTTAGGCTCTTTGTAGTTTAT 108733 28 100.0 32 ............................ TAATACTTTTAGTCCGTTTCCATCGTGAATAT 108793 28 100.0 32 ............................ ATATTAGGAAAATTACTCCTGTGCTTATCAAG 108853 28 100.0 32 ............................ TGTGCTTATCAAGGTCAAGTTCGCTACGCTCA 108913 28 100.0 33 ............................ TTGCCGCAACAACCAATAAAAATGATTCATCAC 108974 28 100.0 33 ............................ TTGCCGCAACAACCAATAAAAATGATTCATCAC 109035 28 100.0 32 ............................ ACTCTCCCGTTTTCATGCGATTCTTGTTGAAT 109095 28 100.0 32 ............................ GCGATCGGCGTGGCATTTAGTGCAATCTTCGG 109155 28 100.0 32 ............................ TCAAGTTTTTCTTTATGGCGGGCAAAGCTGTC 109215 28 100.0 32 ............................ GTTGTAAATGGCCTAACGGTGGAGAGGATTTA 109275 28 100.0 32 ............................ TCCATCCGCGCCCTTTTCGGCGTGGTTTGTCG 109335 28 100.0 32 ............................ GTGTTGTGGCGGATGAAAGACGACGCAAAAAA 109395 28 100.0 32 ............................ AAAAAAGCCAGAAAAAACAAAGACGGCTCAAG 109455 28 100.0 32 ............................ CTCGCCGGTTTTCAAGACCGACCTCATTTTAT 109515 28 100.0 32 ............................ TAATTCGTAGGCTAATTGCTTTAATGGTGCTT 109575 28 100.0 33 ............................ TTTTGATAGTCGGCTTGAAGAGCAACTTTCTTT 109636 28 100.0 32 ............................ ATCGCATTTAACCAAGCCGAAGCCCCCTCTTG 109696 28 100.0 32 ............................ ACATGGTGCGCAGCAAAAAATCGGTATTGGCC 109756 28 100.0 32 ............................ ACTACCACCTTTTTGACTTAATACGGAAATCA 109816 28 100.0 32 ............................ ATTATTATGTTAAATAGTAAAATCGCTAAATC 109876 28 100.0 32 ............................ TGTTCTCATTTTTTAATTCCTCTTTTATTGTA 109936 28 100.0 32 ............................ TAATACTTTTATTTTATTGGCGGATCGTTCCA 109996 28 100.0 33 ............................ TGCTAAAAAATTAAATTCTTCCAATGCTTCAAA 110057 28 100.0 32 ............................ TATTGTTAAATTTTTGAAATGTAAGAATAAAT 110117 28 100.0 32 ............................ GTTGGTAAATCGTTTAGAAATTTCACGGGAAC 110177 28 100.0 32 ............................ TGTATCAAAAACTTTAAAGCCTTTTAAATCTT 110237 28 100.0 32 ............................ TAACAGTACACATTCTAAAAATTTGTTCATTT 110297 28 100.0 32 ............................ ATTTTAGCAATTCATAAACTAAACGCCCTTTT 110357 28 100.0 32 ............................ AAAAACGCTTGCCCGTCTGATCTTACAAAGCG 110417 28 100.0 32 ............................ ACTTTTGTAAGCCGTTGCGGTAACTATCCAAA 110477 28 100.0 32 ............................ AATCAGATATATTTTAAAAACGATCATAGATA 110537 28 100.0 32 ............................ TGATCGGCTAACGCTTACAATGTTATGCTTAA 110597 28 100.0 32 ............................ TGTTGTAAAAATTAAATCCGATTTATTTTATT 110657 28 100.0 33 ............................ TTGCAAAATGCCCACAAATTCGGCAAGCGTTAT 110718 28 100.0 32 ............................ GATCATAAAAATTAAATTCAATTTATTTTATT 110778 28 100.0 32 ............................ TTTTTGCGTGTCTGCTAATATTGCGCTTGTTA 110838 28 100.0 32 ............................ TATCTACCTTACGCCTTAACCGCTAAAATATA 110898 28 100.0 32 ............................ TTTTTCTCCGGAGTGCTTCGCTTACTTAATTT 110958 28 100.0 33 ............................ CTTTAATATTTGTCGGAAAATGCGAAGAGATAA 111019 28 100.0 32 ............................ TTTGTTGTTATGTATTGTCGCAAAATCTTTTT 111079 28 100.0 32 ............................ AGTATCAAAAACTTTAAAGCCGTTTAAATCTT 111139 28 100.0 33 ............................ AACAAGAGGAAAAAGAAAATGTTGAAATTTGAT 111200 28 100.0 32 ............................ ACTTCCGCAAGCCGTTGCGGTAGCTATCCAAA 111260 28 100.0 32 ............................ ATAGATTTTGTAAGTTCAAGCGTGAAAAAATT 111320 28 100.0 32 ............................ ACAATGTGCCGAAAACGACCGCCAAAAATTAG 111380 28 100.0 32 ............................ GTCAATCGCTTAAATTTTAAACAGTCAACACA 111440 28 100.0 32 ............................ ATTTTGGCGACCGCTAGCCGTCTTAATGTAGG 111500 28 100.0 33 ............................ ATTGGCGCAAACCGTTGCGGTAGCTATCCAAAA 111561 28 100.0 32 ............................ TAATTTGGAATACATTTACCAAAGACGCGTAT 111621 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CCATTGGCGCGTCGTAACGATGAAAACCCGGAAGTCACCGATCGCTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGTTTCTCCGAATTGAACGATGCCGAAGATCAAAATGAACGCTTTGACGCGCAAGTGGCGGCTAAAGAAGCCGGTGACGACGAAGCGATGTTTAAAGACGAAGACTTCGTTGTCGCCCTTGAACACGGTTTACCACCAACAGCCGGCGAAGGCTTAGGTATCGACCGTCTCGCCATGCTTTACGCCAATGCCCCATCTATCCGCGATGTGATTTTATTCCCGGCAATGCGTCAGAAATAATCAAAATCAAATCATCCAAAAAAGGAAGTCATTCGACTTCCTTTTTATTTACCCTTTATTTCCACCAATAAATTTCCCTTTTAAGAACAATAGGTTAAGCACTGCAAATATAAAAGGGATTTTATTATGTAAATACGCCTATAGCTTGGTATATCAGGCATTTTCAATTAAAATGTCTA # Right flank : TGTTTATACTGATTTTTCAGAAGACTGGCCACAGGTTGTTGAGGATAGCTACCTGCAAGCACTAACGTATCTTGCCATTCCGTCCCTAAGAACAACAGTCTTGCGTCTTTACTCGCTTTGACAAACGGTTCTGTTTTGTAGATCCACTCATTACCAAATTCCACTTTATCCCAGTGCGGATCAACTCTAAACAAGATGTCTAAGACCTTCTCACGGTACAAAGCTGAAGCTTTGCTCGACGGCGCAAAAGACGGCTTCACTGCCGAATAGGCAGCTTAGAAACAAAAGAGGCGTTACCGCAAAGTAAAGGACAAACTTCACTGCCGAATAGGCAGCTTAGAAATTTCCGCCGCCAACATTGCCAAATCCATCGCTCTTCACTGCCGAATAGGCAGCTTAGAAAAAACAGGGATTCCGGGCAACCCACAAGGGCGCCTTCACTGCCGAATAGGCAGCTTAGAAACACATCCCTTTTTTAAAACCGTTTTAAAACCTCTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 111902-113245 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPM01000002.1 Aggregatibacter segnis strain C2001002503 C2001002503_S3_ctg_596, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================== ================== 111902 28 100.0 33 ............................ CAAAAGAGGCGTTACCGCAAAGTAAAGGACAAA 111963 28 100.0 32 ............................ TTTCCGCCGCCAACATTGCCAAATCCATCGCT 112023 28 100.0 32 ............................ AAACAGGGATTCCGGGCAACCCACAAGGGCGC 112083 28 100.0 32 ............................ CACATCCCTTTTTTAAAACCGTTTTAAAACCT 112143 28 100.0 32 ............................ AATTAACGCCATAATATTTTATCTCTTTACTT 112203 28 100.0 32 ............................ ATTACACTAATTAGCCATACACTCATTTTTTT 112263 28 100.0 32 ............................ ATTAACCACCGTGCAGATCGCAAACATGATTG 112323 28 100.0 32 ............................ TGTCGCCGTGTTACAAGAACATATTGATAATC 112383 28 100.0 32 ............................ AAATCCAAATCTTCCGCCAGCTCGTGCAACGC 112443 28 100.0 32 ............................ AAAAGATGGTCGATGCACTCTATACGGTGAAG 112503 28 100.0 32 ............................ ACTGTAAAATTAATCCATTGGGTAATTTACAC 112563 28 100.0 32 ............................ TATTACAAAATCATCGAAAACGGCAAAGACAT 112623 28 100.0 32 ............................ TTTCCGCCTCTAAATGTTCGCTCATTCGCTCC 112683 28 100.0 32 ............................ GTCAAATTCATGACGGTAAAAGTGACGTAAAA 112743 28 100.0 33 ............................ CTACTACCAGCCCTTAAAAGAGTATTAAGCACC 112804 28 100.0 32 ............................ TGTAATGGTAGTTGCTGGGTCAACTACGATTT 112864 28 100.0 32 ............................ TCTAAAAATCAACGTAGCGACACACAGGTGTT 112924 28 100.0 32 ............................ ACGTTAAAGCGTTGGTGGATTAAATGATACGC 112984 28 100.0 32 ............................ TTGTGCTAGTACTTTACCGGCTTTTGCTGTTA 113044 27 89.3 143 ....................-A..A... CGCCTAAAAAACTGACCGCACTTTTTCTTACAACAAAATCAAAGATGCTAAAGCTACACGTTTCATGTCTGAAAAGTAAGTTTATTGCTATAATCATAAACCTACTGAACAAGTAGCTTAGAAAATAGGTGTTTATTTGAAAC 113214 28 85.7 0 T..A.............G......T... | TA,A,T [113230,113237,113242] ========== ====== ====== ====== ============================ =============================================================================================================================================== ================== 21 28 98.8 38 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : TAGAAAGTCAATCGCTTAAATTTTAAACAGTCAACACACTTCACTGCCGAATAGGCAGCTTAGAAAATTTTGGCGACCGCTAGCCGTCTTAATGTAGGCTTCACTGCCGAATAGGCAGCTTAGAAAATTGGCGCAAACCGTTGCGGTAGCTATCCAAAACTTCACTGCCGAATAGGCAGCTTAGAAATAATTTGGAATACATTTACCAAAGACGCGTATCTTCACTGCCGAATAGGCAGCTTAGAATGTTTATACTGATTTTTCAGAAGACTGGCCACAGGTTGTTGAGGATAGCTACCTGCAAGCACTAACGTATCTTGCCATTCCGTCCCTAAGAACAACAGTCTTGCGTCTTTACTCGCTTTGACAAACGGTTCTGTTTTGTAGATCCACTCATTACCAAATTCCACTTTATCCCAGTGCGGATCAACTCTAAACAAGATGTCTAAGACCTTCTCACGGTACAAAGCTGAAGCTTTGCTCGACGGCGCAAAAGACGG # Right flank : ACAAATATAAATAATTTCGTGATCTCACTCACAACTTTAAAATCACATGATTGTTTATCGATATATTAAGCATACAATAATATTTAAAAATAAACTCCTATGGATAAATACAATGATAACTAAAACAAGCATAATAAAAACTATCCGACAATTTCTTGTTGAACAAAATCATAAGAAATCGCAAACCGATAGGAAAAAACTAGAAAATGCCAATCTTTCAGATAAAGAGGAATTACTAAAAAAAATTGCCGACTACGACGAAAAATATCGTTTTGATGTTTGGATTCCAAATGCGGCGCTTGTTTTAGCAAAACAGCTTTATTTTGGAACGCATATTTCTCGAGGCATTCATTCTTCCTCAAAAGGAGACAACGTAAATTTTCAATCTGCTCCGACGCTTCCTCCTGAATTTGTCGGTTCACAATTAATCCCAAAATTAGAACTTGATGCAAATGGAAACGCGGCGGCACTTCCTTTGGCCGGTTTCTTTAATATTATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //