Array 1 807036-812677 **** Predicted by CRISPRDetect 2.4 *** >NC_015499.1 Thermodesulfobium narugense DSM 14796, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 807036 30 100.0 38 .............................. CAGGACGAATATAAAGAAGATAATCTCAGACATTGAGA 807104 30 100.0 35 .............................. CGCTATTCGCTCAAGCTCACTAGTCGACATAAGCC 807169 30 100.0 35 .............................. AAAAAAGAAATAAGTTTGTCTTCTTCTGAAATATC 807234 30 100.0 37 .............................. CATTTCCATCTATACCAAGCCAGTTGTTCAGGAGTAA 807301 30 100.0 34 .............................. GCGTAAACTGTAATAAGTTTACACTCGTCGTCGT 807365 30 100.0 35 .............................. TGGGATGGTCTGGGTCCAGCCCACACCAATCCCAG 807430 30 100.0 37 .............................. GCAGTTGGGACATGCGATGATGCCCACAATAATTTTT 807497 30 100.0 40 .............................. AATGACAATATAAATATTTTGTTTGATAGATTTGTCACAA 807567 30 100.0 37 .............................. TGTAATCGTTAATGATATTTTCAATATCGATTTCTAA 807634 30 100.0 37 .............................. AAAGTTCTTTTTATTTCTCTTACAAAGTCGTTATCGT 807701 30 100.0 34 .............................. AAATTTCTTTAAATTTTTTGATGTCTTCTGTTAC 807765 30 100.0 37 .............................. GAAAGTATACGAAATACTTTCTGAATTGAAATTTCTC 807832 30 100.0 35 .............................. AGCTTTTTCACAAAAATTTTCATCATTTTATCCAC 807897 30 100.0 37 .............................. GTAGAAGAAGCTGCTTGTCTTGGTTTCAAAACAACCA 807964 30 100.0 36 .............................. TGAATAAAGTGCTTGACAGAAAAAAAGAAAATGTAA 808030 30 100.0 38 .............................. TAATCTTGGAAGAACTGGTGGAGAAAGCACAGTTTCAG 808098 30 100.0 38 .............................. AGAAAGATTTACTGGTATTTCTGTTTTTGAAACTTTTT 808166 30 100.0 38 .............................. AGGAAAGTGTAAAAGACATATAAAACATCGTCCCTATA 808234 30 100.0 38 .............................. CTAAGAAAGAACTCCCTCAACCCCCAAGATCACTACTA 808302 30 100.0 36 .............................. CAATTTTGTTATTTGGTTGTGTTACAATTGTTTTTT 808368 30 100.0 38 .............................. GAACTCTATAATATAGGCGACATGACAATATATGTTGA 808436 30 100.0 40 .............................. CTAAACAAGATATTAACGATATAGCAAATGCCTTAGTCCA 808506 30 100.0 38 .............................. AGTTCCTTGTCAGGGCAGGAAGTGTCCTGAAAAGGAAA 808574 30 100.0 37 .............................. TGGGTAAAACACTTGACAAGAAAAAAAGAAAAGAATA 808641 30 100.0 34 .............................. GTCGATAAGAAAAATTTATAAATATGAACAAAAA 808705 30 100.0 40 .............................. TATACGTCTTCTGACCATGACTGGCATGTGCATATATATG 808775 30 100.0 36 .............................. AAGGTAGCAACGTCTCCATTAACAAACCCTCATTGG 808841 30 100.0 37 .............................. GGAGCGCAGTTGTGGTTTCGAACTCTTCTTCGTCCAG 808908 30 100.0 40 .............................. ACGAGCGTGCAAGAAAGAAACCAAGATGGTGGTGCGGCTG 808978 30 100.0 36 .............................. ATGAAACTTTTAAAAAAGGAGTGATATAAATGATGA 809044 30 100.0 37 .............................. AAAGCAATGAAAGAATATAGAGAAATTTCACTTCAGA 809111 30 100.0 35 .............................. TCGGATACTTCAAGTTATATAAAAAATTTCTTTAA 809176 30 100.0 38 .............................. GTTTTTGAAAAAACTGTAAAAGAACTTCTGAAAGGTTA 809244 30 100.0 35 .............................. TCTATTTTCTAATGCTGAAAAGGTATTTTCCCCTT 809309 30 100.0 37 .............................. ACAGAAGAAATGAGATTAGCATTTAGAACTATTCAAA 809376 30 100.0 37 .............................. ATCGTTCCCTTCACTATCAGATTTTGCAAATAGTTAT 809443 30 100.0 38 .............................. AGTCAATCTGGGTCAACAGCACCAGTTTTTTCAAATGA 809511 30 100.0 35 .............................. TTTCAAATCCGTCACAATAGAAAGGGTCTGCTCCA 809576 30 100.0 35 .............................. CAACATTTTTTTCTAACATTGCAATATTTATTTTA 809641 30 100.0 37 .............................. CAGTTTTTTCAAAAATTAATTTCATTTTACTCCTTCC 809708 30 100.0 34 .............................. ACGAAAGAAGAGTATCAGGACCTCCTCGTCCTGA 809772 30 100.0 37 .............................. ACACAGGCGCAAAATTCTTCAAATAGAGGCACTTCAA 809839 30 100.0 37 .............................. GGACTAAATCCAGCACCCGGCCTTCTAGTAGATTTTG 809906 30 100.0 36 .............................. AAAGTCAATATAGGTACTATAAGCATATAATATATT 809972 30 100.0 37 .............................. GTTGATATGTCTATATAGACTTGAAGCATATAATATA 810039 30 100.0 37 .............................. CCGGCGATGTTGATGACCCGCAAAAAGAGGGGTTCGA 810106 30 100.0 37 .............................. AGAATACACGAGGGGGTTCTACCTTCCCTATTTTTTT 810173 30 100.0 36 .............................. GGGATTTTGAGGGGGTGCTCTCATATGAGAGACTCC 810239 30 100.0 36 .............................. AGTTTAATGCTGATAACCCATATACAAAAACGCTGA 810305 30 100.0 36 .............................. AGACTTCCTTGTCCTGCTTAGGCAGGCAGAAGAAGT 810371 30 100.0 36 .............................. GACGATAAGAAAAACTTATAAATATAAACAAAAAAA 810437 30 100.0 38 .............................. CGCAAGTGAACTCCCTGAAAAATATCTAAGGGGGTTCC 810505 30 100.0 39 .............................. TGGGATGGTCTGGGTCCAGCCCACACCAATCCCAGTAAC 810574 30 100.0 37 .............................. ATACTGTTATAAAGCGCTATTCACAATTACAAAGCGA 810641 30 100.0 44 .............................. TCATTTGCGCTCCGACGAAAGTCTTTTCATCGACGAAAACCCCC 810715 30 100.0 35 .............................. AACAATGTTGTAGGATAAGGAATTGTTCCATCCAA 810780 30 100.0 37 .............................. TGTTTTTTTTAAATACGAGCGTTTTTTAAGCAATTAG 810847 30 100.0 34 .............................. GCACTTTTCAAAGAACTTTTAATTATCAATACCA 810911 30 100.0 37 .............................. AAGATTTTCAGGGAGCTTTTTACGCAAGTGAACTCCC 810978 30 100.0 35 .............................. ATAATAGATGGTTCGTGCATTTTCCCGTCCTCTAA 811043 30 100.0 36 .............................. CAAAGAGGGAGTACAGGCAAATCCTCGCCCTCTTGA 811109 30 100.0 36 .............................. TGTCTAAGCTAAGAGTAAAATCTAAACTAGCATTAG 811175 30 100.0 38 .............................. CGTTTCCAATAGTATTTGTTCCTGCAGGTAGTGGTTGA 811243 30 100.0 37 .............................. TTGCAGGCGATGCACAATCAGGCATTTATAAGTCAGG 811310 30 100.0 36 .............................. CATATATACTACCATAAATATGAGTATATATAAACA 811376 30 100.0 37 .............................. AGTAGAAAGCCATTTGATATAGGGGGGTCAATGTTTG 811443 30 100.0 35 .............................. GCTTTACAAAAAGAAACAGACCAAACCAATTTAGC 811508 30 100.0 39 .............................. AACTCTTCTTCATCCAGGAATTGGCCCTTTTTGAGCCAA 811577 30 100.0 39 .............................. CTACAATGTTTTTTGCTGCTAATCAAATGCCTTATGCAT 811646 30 100.0 37 .............................. ATAACAGCCCTAATACATTAGACATCTACAACGATAT 811713 30 100.0 34 .............................. TATTGATATCCTAACTGAGCAAAAATATTTTTAA 811777 30 100.0 38 .............................. TATTGCTTTTAGGGTTGTTTTTTTGTTTTTTGTTTTGT 811845 30 100.0 38 .............................. TCGTTCAAGATATATAGCCTAACAGATTATCTAAATGA 811913 30 100.0 35 .............................. TATATTTTTTATTTTTTTTATTATTATTATATATA 811978 30 100.0 34 .............................. TTTCAATCATGTCTCTTTGAACGTTGCCACCTAA 812042 30 100.0 36 .............................. AGATTAAAGTTTGTAAAGGAAACGTATACAAACAAA 812108 30 100.0 36 .............................. AAGGAAAGATATGGCATTGATGTACATACTATAAGA 812174 30 100.0 37 .............................. TTTTCAGATACATCAATACCATATAACATAATTTATA 812241 30 100.0 37 .............................. CTAAAATGGGCATGGTTTTTGAGCCTTGTTTACCACC 812308 30 100.0 36 .............................. TGGGATTGTTACAGAAGTAGAAGTAAGAGGGGATGA 812374 30 100.0 40 .............................. TGTAATTGTTTAGTGCTTGTTCGTTTTCAATTAATTTTGA 812444 30 100.0 39 .............................. AAGAACCTGTCTTTTTCTGTTGGTTCTTGTTCTTTTTCT 812513 30 100.0 35 .............................. ACACTTCTTTACCATCCACTAGGATGGCAAGTTGC 812578 30 100.0 40 .............................. CATTTCCAGCGATACCAAGCCAATTGTTCAGGGGTAATAC 812648 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 85 30 100.0 37 GTTTTTACGATACCTATGAGGAATTGAAAC # Left flank : TAGAAGATTAATAAGATTGGAGTGTTATAAGATTGAAAAGTTTCTTATGGAAGATTATGAATATAAGCCATTTGTTATGGATTGGTAATGTTTATAATCTTGTACTATGATGTAAACGAAAAACGATGTTCAAAGATGTTAAAAAAGTGTAGAGCATATTTACAATGGGTCCAAAATTCAGTTTTTGAAGGGAATTTAACTGAGTCACAACTAAAAAGATTGATTTCTGATCTAGCAAAGATTATAAATGAAGAAGAAGGCGATAGCTTAATTATTTATAAGTTCGAATCTCAAAGATATACAGATAGAATCGTCGTTGGAAAGGATAAGAAGACAGATATTAATTTTATTTAATTTATCTGTCGATTCCAAATAATGACAAATATATGATATATAGACAGAATTTCTTTTAAAATAAAAGCATAAATATTCAGCTTTTTTATTATTTTAAGTTTGGAACTTCATGTTTAATATGCTAAAATAGTAAGTTAAGTCTAGTG # Right flank : CTTTGGTGTATTTGATTCTGTATTTATGGTTGTTTTTGGTTTTTATGTAAATTTTCATGTAAAATAGACCCAGTTTTTTCATGAAAAATGACCCACCTTAATATAAAATACCCTACAAAATTTTTTGTAGGGAGGATAAGAGGTGTTAAGGATGGAAGATTGGGTAACAATAATTAATCTGAAGAAACGTAATCCAAGTATGGGAACAAGAAAGATTGCAAAGATTCTGGGAGTATCTCGCAATACTGTAAAAAGGGCTCTTAAGAGTGAAACCTATCCTTCCTATGAGCGGGGAAAGATGGTTTACAAGGAACTTGAATCATTTCATGAGTTTATCAAAGAGGCTTTTGTCTTTAAAAGACAACGAGTATCTGCAATCATATCTAACCTGAGATCTAAAGGCTACAATGGCTCTAACATAGCTGTTTACCGTTACATTAATGAACATTTCAAAGAGTTAAAAGGATATTTCTACAAAAACATAACGAGCCATATGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTACGATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 1776838-1769728 **** Predicted by CRISPRDetect 2.4 *** >NC_015499.1 Thermodesulfobium narugense DSM 14796, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1776837 36 100.0 38 .................................... GTATTTCTCTCAATAACTGTTTGAGAGATTTACCTTCT 1776763 36 100.0 40 .................................... TTTAACACCCCCTTTAATCCAAAAACTTCAGAATCAATAT 1776687 36 100.0 40 .................................... TATTTTCCTTGATATTAAATAAAATTTTTGTCTTTCAATA 1776611 36 100.0 40 .................................... ACATTTTTCAGTCTTGAATGTATTTTGAATAATTTTTCAT 1776535 36 100.0 36 .................................... GGAAGTAGTGAGAAAGATTATTTTAAAGAAGAAATT 1776463 36 100.0 44 .................................... TTTTGACTTTTCTTTTGCAAATAATACGCTCGCTGCGCCACCAA 1776383 36 100.0 40 .................................... TTGAATATCAAGAATATTTTTTCTTGTAAGCCTTCTACAG 1776307 36 100.0 41 .................................... TTCTGTATTGTTTCTTGTGGTTTTGTTGTAGTAATAATTTG 1776230 36 100.0 40 .................................... TGGTACAGAGACTACTTTTTCAACTGCTGATTTTACATTT 1776154 36 100.0 42 .................................... TCTTTACTAACCCGTGCCAATTTTTCTTTCTCTCATCAATAA 1776076 36 100.0 42 .................................... ATTTTTCTTTCTCTCATCAATAATCTTCCTTATCTGTCTTAA 1775998 36 100.0 40 .................................... TTGCAAATCAGAGTCTTCAAGTTCGAAGACTCTAAAATTG 1775922 36 100.0 39 .................................... CATAAAACGGATCTGTCCAGCTCCAATGAGCCAATCACA 1775847 36 100.0 37 .................................... AATTTTGATTACATCTTCTCTTGGATTCATATGATTA 1775774 36 100.0 36 .................................... TAAACACCCACTTGTTACCGTACACACATGGCACGT 1775702 36 100.0 38 .................................... TATGAATTTCTCCAAGACCTACATTGTACGCAACACCA 1775628 36 100.0 45 .................................... ATATATTTGTTGAAGTAGTCGAGCCCGTATATAACAGGCTCCCTT 1775547 36 100.0 40 .................................... ACACTTTCCGAGAAAGACCTTCTCGGAATTAAAATTCCAA 1775471 36 100.0 36 .................................... CTTACAATTTTTTCAAAAATTACCCTCATTTTTTAC 1775399 36 100.0 40 .................................... AAAAAGGACGGCCTCACGGTCGTCCAAATTGAGTGTATAT 1775323 36 100.0 42 .................................... TTTTACACTCCTTAAGTATGGCAACAAGTGACCAAATATCTT 1775245 36 100.0 41 .................................... TGGACAACATTCGTCCAAGATGTATAGATATGGAAGTTCAT 1775168 36 100.0 40 .................................... TTTCAAATCCTTTTAATTCGTAACCGCATACACCGTTTTG 1775092 36 100.0 41 .................................... TTGAGCCATCGTCCTGAAGGACGATGTCATCTGCTTGAACT 1775015 36 100.0 42 .................................... TTCCTATTGTGAAGCTACCACCATGGTGCTTCACGTATTCAA 1774937 36 100.0 39 .................................... AGGAATACTTTCTCCTCGGCAAAGTTCCAAAAACTAATG 1774862 36 100.0 40 .................................... AGACCCATCCATACTCTCAAAAAGGACGGCCTCACGGTCG 1774786 36 100.0 40 .................................... TAAAACACTTAGGAAAATTACCGACGCCCCAATAAGCTGT 1774710 36 100.0 41 .................................... TTTTTGAAAGCCTCGTCTACATTGTGTTGCAACAACCCTAA 1774633 36 100.0 38 .................................... CATATTGTTCTTCTACTTCCCTTCCACATATCTTACAA 1774559 36 100.0 40 .................................... CCAAATCTGGGTACGTACAACCCATATTGTTCTTCTACTT 1774483 36 100.0 40 .................................... CTTTGGGCGAGCCGGCAAGGGAATGTCCTTGCTGGCCCTT 1774407 36 100.0 42 .................................... ATATAAACCCAAAAACGTCACCATCTACGTCGATGGCAACGT 1774329 36 100.0 41 .................................... TATCAATTCCTTTCCCATCTTGTTAAATAACATTAATCTAC 1774252 36 100.0 41 .................................... CAGTTCCATTCATTGCTAATATCATATTCCCTGCTTCAAAT 1774175 36 100.0 42 .................................... AATTTTTGACCTCTTGGACTTTTTAACTGCTACTCCATTTCC 1774097 36 100.0 41 .................................... TTTCCCAGTGGTACTTGTAGATCTTGTCCCTTGCAGGACAG 1774020 36 100.0 40 .................................... TATTCAAAATATTCAGGATCTTCTGAATTAAGCATAAATA 1773944 36 100.0 39 .................................... TTGCAAAAAACCATAAAATAATTAAAGCTCTTAAAAAAT 1773869 36 100.0 39 .................................... TTTCATATTTGTATTGTTTCAAATCTTCTTTTTTTCTTA 1773794 36 100.0 39 .................................... TCTTGTACTTCTTCAGAAGTTCAAGAAGAACTAAAAAAT 1773719 36 100.0 42 .................................... TTGCTCAGGAACTACCATTCCTTTCACAATATTGTATATTCC 1773641 36 100.0 40 .................................... ATAAGATTAAATTTTTACCATGCATATAGCAATGAGGATA 1773565 36 100.0 41 .................................... TTTCATCAACGCTAATGATCATCTTTTTTAACCTTTTTTCA 1773488 36 100.0 40 .................................... TTTTTTGTCAGCAATAGTACAATGATTTTCATTATCATTT 1773412 36 100.0 42 .................................... CCAAGAAGCCTGAAAAACCTACTATTTTATAGTAGGTTTCGT 1773334 36 100.0 42 .................................... CTTGAAAAGTGCTTTTTTTGCACTCTTCAAGCAAATTGACTA 1773256 36 100.0 40 .................................... ATAGCGATGTTCCTGTTGCCATTAGTCGTAAATACAATCG 1773180 36 100.0 41 .................................... ATTTTGATAAATTCTATAAATCTCTTCTCGACTAATCATAG 1773103 36 100.0 41 .................................... GATGGAAAAACCATCCATTCCATTCCTAGTAAATCTCTTGA 1773026 36 100.0 40 .................................... GAGCACCCCATTTATTCCCTGGATGGAAAAACCATCCATT 1772950 36 97.2 41 .........................A.......... TAGCTTCTGGACGTATCTTTGTTGGGTCTATAAGATTTGAG 1772873 36 100.0 41 .................................... CTTACTGTATGTTAAGTTTATTAGATATGTAGCCTGTCTAA 1772796 36 100.0 42 .................................... TACACTCAACCCCAACCTCTACACCGTTATTTTCATCATATG 1772718 36 97.2 39 .........................A.......... TTTACTTCTTTTGATACATATTTACTCCAATAAAGTACA 1772643 36 100.0 40 .................................... TTGGGTTTGGAGCATATACCCTATGAGTAGTCCAGTTCCA 1772567 36 100.0 42 .................................... TTAATTTTTTACTCTCTTTTTTCATTTTTTTAAACCTACCTT 1772489 36 100.0 43 .................................... CCTGAAAGCCACTGAAGCCTACTATAAGATAGTAGGCTTCATT 1772410 36 100.0 39 .................................... TATTTTGATGCTTATTTTCAAATTTAATAGCTTTTTTTA 1772335 36 100.0 38 .................................... AAGAGCTGACCTGTTACAAAGGACGTAAATCCGTCCTT 1772261 36 100.0 42 .................................... TTTTAACTCCGCCAGCTGCTCGCTGGTCGGAGTGTGACATGA 1772183 36 100.0 36 .................................... ATAAATGCCTCGTGAAGAGAAAAACGAAGACTGCAG 1772111 36 100.0 37 .................................... TTTGCACTTGCGCAAATCCCTAATTATTTCCTTGATT 1772038 36 100.0 32 .................................... TCATCAAATAAGATTAAATTTTTACCATGCAT 1771970 36 100.0 39 .................................... TAGTTAGTCCTCCTTATTATAGTATTTGAAAATCATATT 1771895 36 100.0 35 .................................... CTTTACCTTTAACATACTTCACCTCCAAGTCCAAA 1771824 36 100.0 38 .................................... ACCTGTACTAGACTCGCTATATAGCGAGTCTAATTCTA 1771750 36 100.0 39 .................................... TATACAGTGCATCAAGTTCTAAAATAACCTTTTCATCAA 1771675 36 100.0 39 .................................... CCGTAAATACAATCGTACTTTTACCTGTACTAGACTCGC 1771600 36 100.0 42 .................................... TTTCTGTGGGAGCCACTTTCGTCAATTTCATCTTTTTGTCCT 1771522 36 100.0 41 .................................... TTTTGTGAATCTACTTTTCTCTCTAGTTTCAATTTCATTGT 1771445 36 100.0 43 .................................... TATTCGTAAGGCTCCGACTCATAACAGTATGGCTGCCCCTCCA 1771366 36 100.0 42 .................................... CAATTTTCGTTTAGCCTCTTCCAGTATTTCACTTTTTTGTTT 1771288 36 100.0 39 .................................... GGACCCGTCCTCGTCTATAAAGACGTTCCTCCCCCATGC 1771213 36 100.0 36 .................................... TAGGAGAAGACGAAGAAAACCAAAGAAACTCTTATA 1771141 36 100.0 40 .................................... TTTCAGAGTAAGCGTAGAAAAGTGGGACATAAAGCCCGTA 1771065 36 100.0 40 .................................... TATACGAGGGGTCCTCGTAATACGGATACCACCTCCCAAA 1770989 36 100.0 40 .................................... TTTCAGAGTAAGCGTAGAAAAGTGGGACATAAAGCCCGTA 1770913 36 100.0 42 .................................... AAATTTCCTGAACTAAGAAGTGCACACCCCAAGAAGGGCGCG 1770835 36 100.0 40 .................................... TTTCTTGAAATAGCTTCTTGGCAGGTTTACCCCTGCCTTG 1770759 36 100.0 42 .................................... CTTAGTCATTTTTGTCCTCCTTTTTTTAAATTTTATCTTCTA 1770681 36 97.2 41 .........................A.......... ACTCCTCGTGAAGAGAAAACAAAAATCGCAGGTTGCGAGAA 1770604 36 100.0 41 .................................... ACACCGGCGTAAGTCTTTCAATATCTCTCTAAGTTCTTCTT 1770527 36 100.0 41 .................................... TCCCTTTACCTTCAACATACTTCACCTCCAGGTCCAGAAAA 1770450 36 100.0 39 .................................... TTATGCCTGCCAAAAAACCTGAAAAGCCTACTATCTTAT 1770375 36 100.0 41 .................................... AAAGGACTCTATTTCAGAAATTTTTAATTTTTTCATTTTTT 1770298 36 100.0 41 .................................... TCATCGATAAAAGAAGTGAAACAGCTTCTTTCATTTTTTCA 1770221 36 100.0 39 .................................... TAACAACAAGCTTTCTTAATTTTTTTTCTTTCATTTAAA 1770146 36 100.0 42 .................................... AGGACTGACCCGTCCTTGTCTTGGACGACATCCCTCCCCCAT 1770068 36 100.0 35 .................................... TAAAATAATTCGCAGGCAGGTTCACACCTGCCAAG 1769997 36 100.0 43 .................................... TCTTCATACTCTTTGATTTCATCTTTGATATTAATGTTAGAAA 1769918 36 100.0 43 .................................... TTTAATGAACCCTTGAAACTCTTTTAAAATATAGCCTCGTCCT 1769839 36 100.0 40 .................................... AGTGTGAATAGAACACCAAAGATTAGTCATTTTTGTCCTC 1769763 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 94 36 99.9 40 GTTAGAAAAATTCCCTGAAGAATAAGGGATTGCGAC # Left flank : CCGAGAAAAGAGTAGTTATTTATAAAACACAGGTTTCTAGTGAAATGAAAGAAAAAACCTTGATGTTAATCGAAAATGTTAAGGATATTTTAGAGAATAAAATTTTTTTACCAAATGGTTTAGTACATCCTTATGCTTGCAAATATTGTTCTGTTTCGAATTTTTGTTACTTTGTTAATGGAATTTCTTAAACTTATAACTTGTTGACTTTATTATTTAAAGTATAATATATATATTAATAAGTGTATAAGTGTAATAAGTGCTATGCAAATCGAACTTTGATAACAAAATAACGTTTTTTTTCTAACTGAAATACTGGTATTCCACTGAAGTTCAAAAAATGGCTTAACTTCGTTTTCATCCTAGGGAAATTATTTGGCTTTATAAGGGTATAGATGAGGATTGGGTATCGTCTGCAATTATGATAGAAAATCATACCCACCCTATTCCAGGATTATATTGATTTGACCGTTGATTAATCAAAGTTTATAATGGTTACA # Right flank : CAATCCTAATAGCGTTGTGTTAGTTAGCACAACGCTATATTAGAAGAATTCTTTGAAGAATAAGGTAGAAAAACAATTTGACTTTATTGAGCGCCACAATCAGTTCTTTGAAAGAGAGAGAGAACTCTTAATTTCTTTGCCTGAAAAAGAGCTATTTTTATCATCATTTCTTGAATCAAGAAAGATAACTTCAGATTGTCTAATAAGCTACAATGGTAACAGATATTCTGTACCGCATTATTTTTCAGGTAAAGAGGCTTGGGTTACAACCTATAAAGGAATAAAGCTTTATATATACTCACAGACTAAGAAATTAATAGCTGAGCATACAATACCAAAAAATAAAGGAAATATTGTAATAAACAAGAGTCATAGAGGAATTGATGACAGAACTAATAAGAGCTAATATTAGCGCTAAGATAGCTGAGTATGTAGAATTACTGTCAAGAATAGACTTAATAATAATTGATGAGCTTGGCTACCTTGAAGTCAACAAGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAAAATTCCCTGAAGAATAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //