Array 1 1704852-1702578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023467.1 Dickeya dadantii strain DSM 18020 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1704851 32 100.0 33 ................................ AGGCTTTGCTGGTTCAGCGGCAGGTGCTGCCGG 1704786 32 100.0 33 ................................ AGATGCTGATCCGACAGGACGACGCCCGCGTTC 1704721 32 100.0 33 ................................ ACGTATCACATCCGCGTTGCTTATTGCTGCTGC 1704656 32 100.0 34 ................................ TTGATGATAACGCCATTACCCGGCAGAAGACCGA 1704590 32 100.0 34 ................................ TGAGATAGAGTGAATAGATAGGGCGTGATATAAA 1704524 32 100.0 33 ................................ ACTGTGCAGGATCTGCGCCGCACTGGAAGTACT 1704459 32 100.0 33 ................................ CCGCGCACTGCAAACAGGCAGTCTTCGCTATTT 1704394 32 100.0 35 ................................ ATGATGCTGCAAAGCATCAACACACGCTCTATGCC 1704327 32 100.0 33 ................................ TGTGCGAACTTGCCGAACAGCTCCAGGGCTTCG 1704262 32 100.0 33 ................................ TATGTGTAACTGTTTGCCGGGATGCAGAACGCG 1704197 32 100.0 34 ................................ CTACCAACGTCCCAATGGCCGCAGACGAAATCTG 1704131 32 100.0 34 ................................ TCTGTTACTTTTACCGCCAGCGCCGGAACGAATT 1704065 32 100.0 33 ................................ AGTCTGCTAAGACTAGTCCGTGTCCGTTGTCCG 1704000 32 100.0 34 ................................ CATTCGCCGGTGCGAAGGTCATCAAGTCGCACAA 1703934 32 100.0 34 ................................ CGGTACCGTCCAGCCCAATTCCATGCCCCATAAC 1703868 32 100.0 33 ................................ AATACCGTCGTTGACGGCAATACGCGCCGGGTC 1703803 32 100.0 33 ................................ ACACCATCGGTAACGATCTGATGAATAACCCCA 1703738 32 100.0 34 ................................ AGCGTCGCAGCGTCGCCACTGGCCCGAGCCTGCT 1703672 32 100.0 33 ................................ TTTTCAATCTTGGCGTTGAGGCTAACTTAACAA 1703607 32 100.0 33 ................................ TATATCGTCGAGACACCCGGCGGGGGCGCCCTT 1703542 32 100.0 35 ................................ AGCGTGGATTCTGGAGTTACACCAGCGCGACGAAC 1703475 32 100.0 33 ................................ AAAAAGATTCACCCTCACATCACCACACCCCGC 1703410 32 100.0 34 ................................ AGTGATGTCGTAGTGCAGGCAGACGCGCAGATAG 1703344 32 100.0 34 ................................ TGGAAAATCGCATCGGCGATATCGCACCGGTCAG 1703278 32 100.0 32 ................................ CTTGACCCGTCCTTGTGGTACTTGTATACAAA GGTGCGC [1703248] 1703207 32 93.8 33 ............G....T.............. TTGCCACCGAGGTTGACACCGTATTCGCCCCCG 1703142 32 93.8 34 ............GT.................. GGGTCGTGGTTTATGGCGATATCAACGCTACGAC GGTGC [1703119] 1703071 32 100.0 34 ................................ TATCGCGATGCGATGCTGTCCGCCGCCAATCCGT 1703005 32 96.9 33 ............G................... TGTCAATAACTGTACGCGATGGGCATCAGGAGG 1702940 32 93.8 33 ......T..............C.......... CATGTCTGATAGTCCTCCCACAGCAGCGCCAGC 1702875 32 93.8 33 ............G..................A ATCACAATGTCATCGACGATCGGAACCGCACCA 1702810 32 96.9 34 ............G................... TTGAACGCCACTGGCCAGAAACACATGCTCAGGT 1702744 32 100.0 33 ................................ CTCGGCGGCGGCGGAATGGGGCCGTCAACGTCA 1702679 32 93.8 34 ............GA.................. ATGATAAGAATCTTAGTGTTACCCTGAAAACCAG 1702613 32 87.5 0 ............G.........C......T.T | C,ACA [1702585,1702589] ========== ====== ====== ====== ================================ =================================== ================== 35 32 98.6 34 GTCGCGCCTCACACAGGCGCGTGGATTGAAAC # Left flank : AGCATATCAACCGGAGAAGCCGCTGTATGATGGTACTCATCACTTACGATGTGTCGCTGGAAGATGCCAACGGCCCCCGCCGCCTGCGGCAACTGGCCAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTATTCGAGTGCGACGTTGACGCTGCGCAATGGGTGGTGTTGCGCCAGAAGCTGCTTACCACCTATGACGAACGTGTCGACAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAGCACCACGGCGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACCCCCGGTACTCATCATTTTCCCGGCCGGTTGGCGCAATCTCATCCAATTGAATGATAAACAATTTATTTCTGTACTTCACCGTTGCGCCCTCAGCTTCCTCCCGCAGACATGACGTTGGCGTTCTTTTAGCGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : TTGATTCGCCGGTTAACGCGGCGATGACGGGTCCGCTTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGCAGGTGCGCGGACAAGGCATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACGTCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGATCGCACATTGGACTCCATCTGGTACAGGCTTAGCGCCAGAAAGGTAGGAAACGACTGGGTGAAGATGCCGAAACGGTGTTTTTGCAGGCTGTTGGCGCCGACCGCGCCCAGTCCGCGGCTGGGCGATCGCTCGACCGCCTCGTGCCCTTCCGCGTACAGCTTGCCGAGCAGACCGGTGTCCTGCATCAGGATCGCCAACGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACGAAAATCAGCCCCCAGATCGCCATGTCGATGCCGCGCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACACAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4031818-4032025 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023467.1 Dickeya dadantii strain DSM 18020 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4031818 28 100.0 32 ............................ AGCCAGCACATCCGTGCGAGGATTGCGAGGAA 4031878 28 100.0 32 ............................ TATGCGACAGGATACTTGGGCGTGGAGGTCGT 4031938 28 96.4 32 ............T............... GTAGTTGTAGCTGTTATCGTGATTGGCACTGC 4031998 28 89.3 0 ........A..AG............... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTCACGGAAATCCCGCCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCATAATCACCATCGGCGCGCAGCGATGTGTACGGCTTATAGTCGCCGGTGGTGCAAACCTTCAGCACCCCTTGTTCCTGCACCTGATCAAGATGAGACGCGGCGCTAGCGCCGCCGGCCAGCCCCAACAACAGAATGAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTATCATGCCGTTTCTACGGCTGCCGGTTTTGACCCTTTTTTTTCGCCTTGTTATAACTCATTGATTTTTAATGACGACAATGATCGACGTTAAAAAAGGGTTTTCCAGGAAAAATCCCGACTTCCCTTTCAAAATCAGGTAATAGGCGATAAATTGCTACG # Right flank : AATTCCGCTGCACACCGATCCGCTGCCGACGATGTTCACTGCCGCACAGGCAGCGGTTGACCGGTTTTTTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGAATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGTGGCACCTGAACCTCTCCTTGTCGTGCGTGCGACGAAGTTGCAAAGAGAATATCGTGGTCATCACGCACGAAATATTTCACTGCACTGACATCTATTCGTTAATCAATAACAAAACAACCCTGCTGTTTATCAACAGCCCCTCGCAGCAGCGATTAACCCTTATTCCGCCGTCAGAGCCGACACCGTCCCTTTTCGCTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4037751-4037363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023467.1 Dickeya dadantii strain DSM 18020 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4037750 28 100.0 32 ............................ TACATGGGATGATCAGGGGCGTTTGACGTGGT 4037690 28 100.0 32 ............................ AATAACTCTTATTCCAATCATTGGCTCTGTTC 4037630 28 100.0 32 ............................ TACTGTCCCCGGTTTTATTTTAGGCATATCTC 4037570 28 100.0 32 ............................ ATTGGCGGGTTGGTCGCCTTGTCAATGAGCTG 4037510 28 96.4 32 ..........A................. AGTATTGCGGGGTGAACTTCGCCCCGGCACGG 4037450 28 100.0 32 ............................ AAACTCAAAACGCTGTCTTTTGAATACTGAAT 4037390 28 92.9 0 ...........T........T....... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : GGAGCTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGACTGCGCGATTATACCGTCATCACCGAAGCGCTGCCGGTGCCGGCGGGCGTGAAGTACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGGCTGCGCCGTCGCGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATACGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACACTGTCCGTTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGTTAAGCGCGGTCGCCACCATCCCCTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTTCGTCAAAATGACGATTTTTCTTTATTAATCAGGTGATAAGCGAATGTTCGCTACG # Right flank : AGTCTCCGGCCATGTGACTTACTCCACCCACTGTTCACTGCCGCACAGGCAGCGGTTGACCGGTGTGCTGGCGTTAAAAACTACGCTGAGGTGGGGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGTGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCAGCCAGTGGTCAAGGAGAGGTGGCACGTGAACCTCTCCTTGTCGTGCGTGCGATGAAGTGGCAAGGAAGCACCATAGCTTATCCCGCACGAAATCATTCACCGCTCCGGCATAAATCCGCCAATAACTAAAACCCCCCGCTGTTTGTCAACAGCCTCAGCCCCGCGGCGGGCTTCGCCGTTTCCTGCGCAGGAATAAAAAAATCCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4046841-4047891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023467.1 Dickeya dadantii strain DSM 18020 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4046841 28 100.0 32 ............................ GTGGCAATGCAGCAGCGGATCAGCGCCGGGTG 4046901 28 100.0 32 ............................ GCACCACCACCGGGGTCTTTAGGTAATACAAC 4046961 28 100.0 32 ............................ TGGCGGGCCATCTGCCAGTTGGTTGTTGAGAT 4047021 28 100.0 32 ............................ CGCGGCGGTGCCTACTGTGGCATTGGCATGTG 4047081 28 100.0 32 ............................ TGCATTATGAAGCGTGCCGTGATTCAGTGCTG 4047141 28 100.0 32 ............................ GGAGGGGCAAACAGTTAACATCCTCTCAGATG 4047201 28 100.0 32 ............................ GGAGGGGCAAACAGTTAACATCCTCTCAGATG 4047261 28 100.0 32 ............................ TGAAAGAGCTCGATCACGCCAACCCAGCAGCT 4047321 28 100.0 32 ............................ ATGTCGCATGTAATGCACCAACCACGCGCAAC 4047381 28 100.0 34 ............................ CAATAAACGACCTGTGAAACCTTCGCCCCGGTGA 4047443 28 100.0 33 ............................ TTCTGACGGCGTTTCTACCGCCGGAATCTGAAT 4047504 28 100.0 32 ............................ GCGCGTGATGATCCCGGTGCTGGGCGGTAAAC 4047564 28 100.0 32 ............................ AGTTGAGCGCAATCATGATAGCGCCTGCATTG 4047624 28 100.0 32 ............................ GGTGTCGAGTTCTGACGTGTGGCGGGGTTCCC 4047684 28 100.0 32 ............................ AGCAGGCCGTGACAATCACAGCAAAATCAGAG 4047744 28 100.0 32 ............................ GATGGCATCGGCAGACGGGGCCATGTTCATCA 4047804 28 100.0 32 ............................ TGACAGTCAATGATCCACGCTTCCTCGCTACT 4047864 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCCCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAAAACGCAGGCTAATAATTAATTGAAAAATACGGATACCCTAAATAATTCGAGTTGCAGCAAGGCGGCGACGCAGCGAATCCTCGGGAGCTTACTCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATCAACTGGAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCGCCGCCATACCCTTTTTTTCAACCGTCTTTTTCGGCATTTAAAAATCAATAAGTTACAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAATTCGTTACG # Right flank : ATCATTCTTCAAGAATTCAGCAAACTTGACCTGCTCCCCGTTGATTAACACACCGCGATGTTAGTAATGTCTTCATCAGCAACATGAGGACATCCCCATGAAGAACCGTTTTTCCGACGAACAGATCATCAATATTCTTCGCGAAGCCGAGGCGGGTGTTTCCGCCCGCGAACTTTGCCGTAAGTACGCCATCTCCGACGCCACGTTTTATACGTGGCGTAAGAAGTTTGGTGGCATGGAAGTACCTGAAGTAAAAAGGCTTAAGTCACTTGAAGAAGAGAACGCCCGCCTTAAGAAGCTGCTCGCCGAAGCCATGCTGGATAAAGAGGCACTACAGGTGGCTTTGGGCCGAAAGTACTGACGACAGACCAGAAGCGGGAAGCCGTGACAGTGATGTGCAAAGCGACAGGTCTGTCGCAACGGCGTGCCTGCAGGCTGACAGGTTTGTCCCTGTCGACCTGCCGTTATGATGCGCACCGCCCGGCTACTGATGCGTATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //