Array 1 870-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000023.1 Chromobacterium violaceum strain L_1B5_1 contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 869 28 100.0 32 ............................ TTAGCCACCGATACCGTGTCGCGTCCCGCGAT 809 28 100.0 32 ............................ CAGCGGCATGGCGGCGCGCTTGATGGCGTGTC 749 28 100.0 32 ............................ AAAATCGGGCGCGCCTCGTCAAATGCCGTTAC 689 28 100.0 32 ............................ GTCGACCACATCACGATTTTGATCATGTTGCG 629 28 100.0 32 ............................ AGCCGGAACAGGGGTAGTTACCAATTGGGTTC 569 28 100.0 32 ............................ ATGACCATCGCCAAGATCAACGATATCCGCGA 509 28 100.0 32 ............................ CTGCTCTATCTGGCATTAATAACCGGAATAAC 449 28 100.0 32 ............................ TCTACACCCGGTTGATGATGGCCGCCACCGCC 389 28 100.0 32 ............................ TCTATTGCTGGCTGTGCCGCTGCAGTTGCGGT 329 28 100.0 32 ............................ GCATCAAATACGCGGTTGCCGATGAAAAAACC 269 28 100.0 32 ............................ GCCAGCAGCGCCACGGGGTACCAATCCGCCAG 209 28 100.0 33 ............................ CTTGGACACCTCGATAGGCGACGTGAGAGAGCC 148 28 100.0 32 ............................ TGGGAGCAGGCGTGCGTCAGGTATCTGCGGGA 88 28 100.0 32 ............................ ACGTTCAATGAATGCCGTGCAGCGCGGGCCGA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CCGTTGGCTCAGCGGCTTCGCCGACCACGCCATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCCGGCGGATACCGGACGAAGCGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCAGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGCCCGCGACCCTTTTCTCTCCCGCCAACCTCCACCTTTTAAAAACAGAGACTTAACATCATGCCGGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATTTCTA # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42838-42504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000043.1 Chromobacterium violaceum strain L_1B5_1 contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42837 29 100.0 32 ............................. CCCACCCCACATTCCGATGCTCACCAAATGAA 42776 29 100.0 32 ............................. CTGCAGGGATACCTGGCGCGCCTGGCGCATGA 42715 29 100.0 32 ............................. GCGAGATTAAACTTGGGGAAAACAGAGATCAG 42654 29 96.6 32 .........G................... TTTCAGGTCGAGGGCGTGGATGGTTGGCGCGT 42593 29 100.0 32 ............................. GAGTGGGTGGGCTATTACTACGACAGCCGCGA 42532 29 82.8 0 ....................A...TG.TC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCCGTGGGGATGAACCGGGGTTAAAACGTGAGCTTCCTCGACAACGTG # Right flank : CTATCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGTTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTTGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000033.1 Chromobacterium violaceum strain L_1B5_1 contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57 29 100.0 32 ............................. TCGCATCACATACCCTGCCTGCGCGCGGTTGC 118 29 100.0 32 ............................. TTCATGCCATTTATCTGCCGCGATGGGCGACA 179 29 100.0 32 ............................. CTATTACGCATTTTGTTCATCGGCCATGAGAC 240 29 100.0 32 ............................. ACGCTTGGCGTTGGCATACAGCAGCGCTGATT 301 29 100.0 32 ............................. TCGGATGCCCGCGGCCTGCTGAAGGAGGGGAA 362 29 100.0 32 ............................. CTTGATCAGCTGATCCTCGATGCTCTCATTGC 423 29 100.0 32 ............................. GCTGATTCGATTTCATACGACCTGCGATTGTT 484 29 100.0 32 ............................. CGGCAGCGGTAATCATCCATTTCAATCAAATT 545 29 100.0 32 ............................. AGGAGATCCCGGAGCACTACAAAACGTGGATG 606 29 100.0 32 ............................. TGTGTCGGCCCCACCAAATGTATTTGCCTCAA 667 29 100.0 32 ............................. ATGGCGGCTGGGTGATGGACATTGCAGACGCC 728 29 96.6 32 ............C................ TTTTCTTCCACCGCATCAGCCATGATGCCGGC 789 29 89.7 32 ............C............G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 850 29 69.0 0 A.A.........GCT..........GTGA | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.8 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : CCCCACGTACGTGGGGATGAACCGACTGCTGAGTTCGTATCGGAATCCTCTATCGAG # Right flank : ACGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCTTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTCACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8152-10013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000033.1 Chromobacterium violaceum strain L_1B5_1 contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8152 29 100.0 32 ............................. GACGCGGTCGCAGCCGTCGAAGCGCTCAAGCC 8213 29 100.0 32 ............................. GCGAATGGCGCGCCGAGCAGCGGGCCGAACAG 8274 29 100.0 32 ............................. TCGCCGACGACTCCAAGCCTACCGGCGGCCAG 8335 29 100.0 32 ............................. AACACGGTAATTGGGCTCTGGCCACTGGCCAG 8396 29 100.0 33 ............................. CGTTGGTTGGTTGGGCATTCCAGATTGAGATGG 8458 29 100.0 32 ............................. CTGATTCAGCTTATGCAGGAATAAATGGAAAT 8519 29 100.0 32 ............................. CTAAACGATTGACGAGAAACGGTGTATGTCCC 8580 29 100.0 32 ............................. AACCGGTCGAGCAGGAATTTCTGTGCGCGCTT 8641 29 100.0 32 ............................. TCGGCGGGCCGCCGGTGGGCGTGTGGCGCGAG 8702 29 100.0 32 ............................. CCCCGCCTCGTCTTCCTTGGTGTAGGTAGCTA 8763 29 100.0 32 ............................. GCAAGAACAAATTCCTGGAGCAGGAGCTGGCC 8824 29 100.0 32 ............................. TAAGCGATCTTGGTCTTGTCGTCCTCGATGCT 8885 29 100.0 32 ............................. GCACCGGTCTGATTCCAGTCTGTGACAATGAA 8946 29 100.0 32 ............................. TTCATGCCTGGCTCCATTCCTCATTGGTCAAC 9007 29 100.0 32 ............................. TTCGCGCCGCCTACAATCGCGCGCAGTACTTG 9068 29 100.0 32 ............................. AAGTGGCCAAGGCCAGGGGCGAGGCAGAAGCG 9129 29 100.0 32 ............................. GGCTGCCCCACCTGGGCGCCGGTGCGCGCCGC 9190 29 100.0 32 ............................. TTTTGCGCGCGCTCCACCTCGTCGCGGGTTTC 9251 29 100.0 32 ............................. CCCCAGCGATTGCCGGGGCCAGGAAGCAGAAT 9312 29 100.0 32 ............................. CCGGGCCAGTTGGCATCGAGCATCCGGATGGC 9373 29 100.0 32 ............................. ACTCTGCGCGGCTATCTGTTCGAGGGGCAGTA 9434 29 100.0 32 ............................. CTGGACACCACTCCGGATATCGAGCTGGTCCA 9495 29 100.0 32 ............................. ACGATGCAGCGCATGCCTGCCTTCAGATACCC 9556 29 100.0 33 ............................. GCGCGTGCCCCTGCAGGGAGTGGCATCGTCTGC 9618 29 100.0 33 ............................. AAATACTCGTCGTGATGTTGCTGTTTGATCAGC 9680 29 100.0 32 ............................. CTATTGCCGTTCCATCTGGCGAGTTCTGGACG 9741 29 100.0 32 ............................. CCAGCGAGGCGACACGGTCGCGGCCTTTCTTG 9802 29 100.0 32 ............................. CATTCGACCTGCAGAGTTATGGAATTGGCGCG 9863 29 100.0 32 ............................. GCTTATGCGCTGAACCTGCTGGCCGCCCACCT 9924 29 100.0 32 ............................. ATGTGGGAGAGGCTTGAGGCCGCTGTTCAGCC 9985 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAATCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTGTCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : GTTCATCTACTGGCAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTCGCTGCCTAGAGAAGTCCCATGGCATGAGTTATGTCAATATTCTTATTGATCAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGATTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACTGCGGGATTTCGGCCAAGGCGTTGGCGCTGCGTTTCGGCCTGCCCGAATGCGCGGTGTTTCGATGGTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18789-19119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000033.1 Chromobacterium violaceum strain L_1B5_1 contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18789 29 100.0 32 ............................. CACGGGATCAGCGCCATCCGGCGTGACATGGC 18850 29 100.0 32 ............................. ACACCGACGGCACGTTGCACGCCGCTGCATCT 18911 29 100.0 32 ............................. GCCGACCGCCAGGCCGGTAAAATCCTGGCGCT 18972 29 100.0 32 ............................. TAGGCGGTATCGAAGTTGAAACCTGCGGGCAC 19033 29 100.0 32 ............................. GACATCCCACTGATCGCCCAATGGCGGGTACT 19094 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CTGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAGATCCGCGATTACCTGTGGCAGCAGGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTTTGCCGCCGCCGGTGTCGGAAGCGGGGGGCGAATAGAGGGCGGGTGGAGTGTGGAGAAAGGTAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGCAATTTTGTTTTGAAAAATCAGTTGCTTGCAATTGGT # Right flank : | # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1218-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000070.1 Chromobacterium violaceum strain L_1B5_1 contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1217 29 100.0 32 ............................. GTATCTGAAACTTGACTGGCCGTCGGCTTATG 1156 29 100.0 32 ............................. GTCAGGCCCGACGGCTGGCCGGCGGTCAGGTT 1095 29 100.0 32 ............................. GGCGGCACGCAGCAGACGCGCCAGCAGGTTGA 1034 29 100.0 32 ............................. TTCGCCCGGATGTACACACCAGAGAAGACCGC 973 29 100.0 32 ............................. CTCGGACGCTGGAGTGGTGCAACTCAAACTGG 912 29 100.0 32 ............................. TCTAGATATCGACGGCGCGCCTCTCTTTTCTC 851 29 100.0 32 ............................. CGTCGGTCGGCACCCCCGTACAGTTCCTGCAA 790 29 100.0 32 ............................. CACTCGTCTACGATCGATTTTGCAACCTGAAT 729 29 100.0 32 ............................. CAGTGGGCCAGCAATCAAGCGATAGACCGCTA 668 29 100.0 33 ............................. GCGGTCAGTAGCTTCGAGTTTCTCAAAATCCAA 606 29 100.0 32 ............................. AGAATTTGAAACGGCTGATGGAGCGCGCAGAC 545 29 100.0 32 ............................. ACCTCGCGCTGGATGGGCTGGCCGTACTGATC 484 29 100.0 32 ............................. CGCATTGTCGAGCGCAACACCCGGTTGATCAC 423 29 100.0 32 ............................. GCCCTGCGCGCGCAGTTGGCGGCCATCAAACG 362 29 100.0 32 ............................. TGCACGGCCTGGACTGGCTGTCGAACGACGTC 301 29 100.0 32 ............................. CGGTGGGTCTACAATGACGATGTCAATGTAAG 240 29 100.0 32 ............................. TCGGCGGCAGTCATTACAAGGAAATGGGCGTA 179 29 100.0 32 ............................. ATGAGAACGGGCTCGCCGCTCGGGGTGTAGCG 118 29 100.0 32 ............................. TAAATCATGATTGGGTGACATTTAGACTAGCA 57 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCCCACGCCCGTGGGGATGAACCGGCGCAAGTCATTGATTTTATTACGTTTTACA # Right flank : GTCTGGGTGGCTGTCTCTTATACACATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 382-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000091.1 Chromobacterium violaceum strain L_1B5_1 contig_92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 381 29 100.0 32 ............................. ATGCCTGACGGGCCACCCAGTTTGGCGCGCAT 320 29 100.0 32 ............................. ATATCGTCCACATCAATTGCCGGATGTTGGCG 259 29 100.0 32 ............................. AAATGCAGTGCCCCGTGATCGCGCTGTCGCAG 198 29 100.0 32 ............................. CCTTGGTCAGCTTACGGCCTTCAGCGTCGAAA 137 29 100.0 32 ............................. ACGAGGCTGCGCGAGACTGTCCCGGTCCTAGC 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : CCCCACGTACGTGGGGATGAACCGGCCGGAGCTTCTGGCGGGGATGATTGCGGCG # Right flank : GGTTGTCTCCTAGATAATGCGCGACGTGCGCGCGTGTTCCCCACGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58-574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGI01000092.1 Chromobacterium violaceum strain L_1B5_1 contig_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58 29 100.0 32 ............................. AACTTGGGATCATCCACCGCGCCCGCCGGCCG 119 29 100.0 32 ............................. AGAAAACCATGCATCAGCCCAGTATTTTTTAC 180 29 100.0 32 ............................. GAATAGGCGTCCATAGCGAAAGAATAGCAAGT 241 29 100.0 32 ............................. ATCCAATCCGCAGAGTTTGTCGGCGATACGCG 302 29 100.0 32 ............................. TGACCGTCAACCAGGCTGCCGAGGCCAACACG 363 29 100.0 32 ............................. CGATCAGGTCGTAATTGGTCTGCCCGGTGCCA 424 29 100.0 32 ............................. CCATCTGCCATACCCGTTCCGCCGCCGCGCCA 485 29 100.0 32 ............................. GCTGCATAGCCAGTTGCCACGATCGCGGCGGT 546 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : CCCCACGTACGTGGGGATGAACCGAAGCGAGCGAAATACAGCGGACGCTTGACCAGCG # Right flank : GCCGAAATGCCGGTTCTGCCGTCGTCCATCAAGGTGTTCCCCACGTACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //