Array 1 777676-776914 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQEP01000012.1 Escherichia coli P0302293.2 gecP03022932.contig.11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 777675 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 777614 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 777553 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 777492 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 777431 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 777370 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 777309 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 777248 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 777187 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 777125 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 777064 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 777003 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 776942 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 794670-793177 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQEP01000012.1 Escherichia coli P0302293.2 gecP03022932.contig.11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 794669 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 794608 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 794547 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 794486 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 794425 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 794364 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 794303 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 794242 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 794181 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 794120 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 794059 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 793998 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 793937 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 793876 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 793815 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 793754 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 793693 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 793632 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 793571 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 793510 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 793449 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 793388 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 793327 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 793266 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 793205 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //