Array 1 30590-31637 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNZ01000004.1 Escherichia coli strain SC_F24_1 NODE_4_length_183848_cov_61.2085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30590 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 30651 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 30712 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 30773 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 30834 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 30895 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 30956 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 31017 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 31078 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [31102] Deletion [31119] 31120 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 31181 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 31242 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 31303 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 31365 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 31426 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 31487 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 31548 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 31609 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57187-58435 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTNZ01000004.1 Escherichia coli strain SC_F24_1 NODE_4_length_183848_cov_61.2085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57187 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 57248 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 57309 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 57370 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 57431 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 57492 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 57553 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 57614 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 57675 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 57736 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57797 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 57858 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 57919 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 57980 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 58041 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 58102 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 58163 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 58224 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 58285 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 58346 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 58407 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //