Array 1 12063-13351 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWD01000043.1 Pseudomonas aeruginosa isolate Ii, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12063 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 12123 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 12182 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 12242 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 12302 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 12362 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 12422 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 12482 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 12543 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 12603 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 12663 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 12723 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 12783 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 12843 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 12903 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 12964 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 13024 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 13084 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 13144 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 13204 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 13264 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 13324 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23755-22225 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWD01000043.1 Pseudomonas aeruginosa isolate Ii, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23754 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 23694 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 23634 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 23574 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 23514 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 23454 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 23393 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 23333 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 23273 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 23213 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 23153 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 23093 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 23033 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 22973 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22913 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22853 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 22793 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22733 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22673 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22613 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 22553 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 22493 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 22433 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 22373 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 22313 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 22252 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //