Array 1 47227-42981 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898922.1 Thioalkalivibrio sulfidiphilus strain ALJ17 D580DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 47226 35 94.4 37 T...-............................... GGCGCATGGGGTGGCCTCCTTAAACGTACTGATTGAT 47154 36 100.0 35 .................................... CACCCTCACGCCACACGCTCCGGGATCATCCGATC 47083 36 100.0 37 .................................... GGAGCTGGCCCTGGTGACTCAGCCGTCGTGGGCCCCT 47010 36 100.0 37 .................................... ACAATCCGTGAGTCATTAGTAAGCTCGCCGAGTCTTG 46937 36 100.0 38 .................................... ACCGGCGCCGTGCGTGCCGTGTAGGCCATATTGGCGAC 46863 36 100.0 37 .................................... GTCATAACGTTTCCTCAGCCTTTTCATGAACTTCTGA 46790 36 100.0 36 .................................... GGCCTGGACGGCTGACCGCTCGCCCTACGTTATGAG 46718 36 100.0 37 .................................... GGCTGGATCAGGCCGCCCGCCAGCACCGCACCCCGGA 46645 36 100.0 36 .................................... CGGCGTTGGCCCACGTGTAGATGTCGGGGGCGTTGC 46573 36 100.0 37 .................................... CCCGCGCTAGTCATGCAACAGGGGCGCGTGTCACATG 46500 36 100.0 35 .................................... GGCAAACTGGTTGGCAATGCTGGTCAGGCTGCTCT 46429 36 100.0 37 .................................... CGCACAGCTCCGCCGTGGCTGGTACCGTGGACATCGA 46356 36 100.0 38 .................................... GCGCAGACAGATCGACACTGGCTGCGCCACGCCTACAG 46282 36 100.0 43 .................................... GGCGCAGCGCACCGAGCTGGTCCACGCCTGGGAGCTGATCCTC 46203 36 100.0 37 .................................... ACCAACAGAGCCACCGCCGCGCTGCGCGGGCCACGGC 46130 36 100.0 35 .................................... CCGGTACCATCTGCAAATTCAGTACACCAGGATTG 46059 36 100.0 36 .................................... GGTGACGGTCCCAGCGTCGCTGTACGGGGGGTTTAC 45987 36 100.0 37 .................................... GTGGCGAGCGCCACGCGCTGACCTGGGGCGGAAAGGA 45914 36 100.0 36 .................................... GACTTTTCGCGTGGATCGGGCCGTGGGCCGCAAATC 45842 36 97.2 40 ..............................T..... GGGCGCGTTCGCTGGCGATGGTGGCATCCAGAACACCTTT 45766 36 100.0 39 .................................... TTCGTTGCAGCGAGCGCGGATTTTGCGGCTGCTGTCGCG 45691 36 100.0 35 .................................... GCCATGTGCCAGCAGGACGGACACCTGCGCCTGCG 45620 36 100.0 38 .................................... TCCATCGTCAGCGACGAGGAAAAATCCCCCACCCAGTA 45546 36 100.0 35 .................................... CATTAACAAAGCGTGAACCTGTGATTTGCCTGAGT 45475 36 100.0 39 .................................... AATCAGCATGGATAATCACCATACGGGACCACTGACGCG 45400 36 100.0 36 .................................... CAGCCTGATGCGCCACGAGGAAGGGGAGCTGGTGAT 45328 36 100.0 36 .................................... GTGAGCTGGCGGAACTCCGTGTTGATGCTTTGGCCC 45256 36 100.0 35 .................................... GGTCGGATCCCATCCCCTTCCGCGGCCCCCAGGGC 45185 36 100.0 37 .................................... CATGGATTCTTGAAGGCGATTGGGCGCGGGACCGGGA 45112 36 100.0 38 .................................... ATGAGCAACGGCGCGGGGGTGTTGCAGACGCATTGGGC 45038 36 100.0 36 .................................... GATCAGTCACCAGCTAAGCGGCTGCGAATATTACGC 44966 36 100.0 35 .................................... CCGCGCGGCGGTCCATGTTGAAACTGCGCGCCTAT 44895 36 100.0 36 .................................... TCGCGCGCTCGCTAAGGCCCTGGCCATTGATTCCAT 44823 36 100.0 36 .................................... AACTGATCGCGTGTGGCCCGCCGGTATACACCAAGG 44751 36 100.0 36 .................................... ACCGATGGCCGGGTCCCGCTCCCAGTCGCCTGCATC 44679 36 100.0 35 .................................... TCCAGGGCGAAACCGGCCCCGCCGGCCCCCAGGGC 44608 36 100.0 37 .................................... GGTAGCCCACCTCCAGCGGGATCGGCAGGTCCTCGTG 44535 36 100.0 37 .................................... GCTCACGCCGGGCTCCCAGACGTTGGCCTGCACCAGC 44462 36 100.0 40 .................................... ATGTCGCAGACGGACAGAAATCAAGAACTCCAACGTCTTC 44386 36 100.0 35 .................................... GCTGATGGTGCATAACGCCCCGGCTCAGGCGACCG 44315 36 100.0 35 .................................... GGAGGAAGGTTTTCATCGTTGTAGGTGAGCGTGAT 44244 36 100.0 36 .................................... AACGTGCTGGGGGCCATCGGTGTAGGCATCAGCTTC 44172 36 100.0 37 .................................... GCTGGCGCCGGTGTCGGTGCTGGAGGAGGTGCTGACG 44099 36 100.0 35 .................................... GGCACTGAGCGCATCGAAGACTTCTGCGGCTACGT 44028 36 100.0 38 .................................... CCGTGGATTCTGCGCTCGATCCGCTACGACCGGGCGAC 43954 36 100.0 36 .................................... TACGGCGGCGTCTTCCTCCTGGATCGCGCCCGCGTC 43882 36 100.0 37 .................................... TGCCGGTGAAATCCGACCGGGTGTTTAAACGCCAGCT 43809 36 100.0 36 .................................... CTCGGCCTCGAACCGGTGCCCGCACCCACGGCAATG 43737 36 100.0 34 .................................... GGGGCATCCCGGAGGCGGTGGTGGAGCGGGCGCT 43667 36 100.0 38 .................................... ACCATGGGTCGAGCACATGTAAGTTTGAAGAAGGAATC 43593 36 100.0 36 .................................... TTTATCCATGATCCGATTTATATCCGTCTCATCCTT 43521 36 100.0 36 .................................... CCTCGGCCGCGCCGCCGAACTGGGTTTCCAGCTCCT 43449 36 100.0 36 .................................... GATGGTGTCGGGGGTGTTGAGCAGGGCGCGCAGGCG 43377 36 100.0 37 .................................... CAGTCCTGCACCAGTGCCTTCAGCCGGGCCAGAAACT 43304 36 100.0 37 .................................... ATCGCGGCCTGGTCAGGGATGGGGAGCTTACCTTGCA 43231 36 100.0 36 .................................... GTTGCCGTTCTTGTCCTTGCGGATCTCCATATCATC 43159 36 100.0 35 .................................... TGCAGGGCGCCCGGAAGCCTCCATCGCCCAGAAAC 43088 36 100.0 36 .................................... GATCCCTCGCAGATCACCGCCGGCGGCCTGGGCGAT 43016 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 59 36 99.9 37 GCTTCAATGAGGCCGCGGCTGAATGCCGCGGAAGAC # Left flank : TCCCTTGGACGAAGGAGGCTCAGCATCGCTGCAAGAGCGTGACAGGATGATGAGGAGGCTTTGACGACTTTGTGAATCGCCACGAAGTCCTGGCATCATTCACCGCCTTGCGGGCGGCCTGTTCATGATCTATATCGCGAACCTGCTGGCAGGAGTGTCGTACGGAGCATGGCAACCGGTGAGCGTCGAATCACAAGCTATGCTGATTCCCTATCAGTCGCGGCATACACCGTTGTGGTCGTGCCACAAAGCGCCTCGAGCGTAGGGGTCGGGTCACGGCTGGCCCTTGCCATAAGTAGATCGGCGGGGAGCTCCACATCGCATGCCTTCGGCTTGTGCGGTGGAGCAGGATACTGGGTCTGCGAATTCGGCTGAAAGCATCCCTCCTGATCCGTCCCCGGGCCTACGTCCTAAACGGGTTCGTGGTACGACCACGACAGCCATGATGCCCGGACCAGGAGAGATTCCTAATACTATATCCCATGATCTCGATGCAATCA # Right flank : AGCCCTCGCAGAAAAGTCCATGACACAAGGCCTGGAGGGCGGATTTTCGAGCACCTTCAATTTAAACACAAATTCGCGCATATCCGGCACTCCACGAAGTCCGACCATAAACAAATTTATCCCATATTTTCAAAGAGCTGGAGTCTTTCGAGCGCTGCCCGGGCTTGCCGGCATTAACCCAGCGCTCGAATCACTCCGGCGGCACGTCGATTAACACGTGCCGCCCCAGAAAGTCTAAATGATCACCGGTTCGCGGGCGACCGGTTCGAATTCCTTGCCCAGGCTTACAACCCTGGGCGCCACTTTATCGGCAATGCCAACGTCGAGGATCACGATGTGATCCTCATCATGATGAATCATGCCATCTAACAGCGCGATCAGTTCTGCATGGCGCTGTCGGCTCATTCGACACTGGAACACTGATAATTGCAGCCACTCACCGTAACCACGCATGAGCCTGAACACACGGCGCCAGCGCTTCTGATCACTGATGTCGTAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCGGCTGAATGCCGCGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.50,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //