Array 1 109627-108011 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSP01000002.1 Salmonella enterica subsp. enterica strain BCW_4369 NODE_2_length_359411_cov_3.17119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109626 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 109565 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109504 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 109443 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109382 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109321 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109260 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109199 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 109138 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 109077 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 109016 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 108955 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 108894 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 108833 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 108772 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 108711 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 108650 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108589 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108528 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108467 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108406 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108345 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108284 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108223 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108162 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108101 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108040 29 100.0 0 ............................. | A [108013] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127482-126296 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSP01000002.1 Salmonella enterica subsp. enterica strain BCW_4369 NODE_2_length_359411_cov_3.17119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127481 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 127420 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 127359 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 127298 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 127237 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 127176 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 127115 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 127054 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 126993 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 126932 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 126871 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 126810 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 126749 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 126688 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 126627 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 126566 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 126505 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 126444 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 126383 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 126323 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //