Array 1 26960-26272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNME010000031.1 Comamonas denitrificans strain MM2021_4 T_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26959 28 100.0 32 ............................ CGCAACTGCTGCGGCGCTACTTTGATCTTTGG 26899 28 100.0 32 ............................ AATCAGCGATTCGTTGCCGTCCAAGAAGTTTT 26839 28 100.0 32 ............................ ATGAAAAATAACAACCGCGCCTTGCGAGGCAT 26779 28 100.0 32 ............................ ACAACGCGGCATTCCACGCGGCGAACGTGTGC 26719 28 100.0 32 ............................ ATCAAACCCGAGTTCGGCACACTGCCCCCGTC 26659 28 100.0 32 ............................ TCTGAATAGCGGCCAACACGTGTAGGCAATGC 26599 28 100.0 32 ............................ CAGGCCCGCCCGCCCGCGATGTTTTCTGAACA 26539 28 100.0 32 ............................ AGGTCAAACATGGCCTTGAGGCCGCGCGACCA 26479 28 100.0 32 ............................ TGGCACCTGCCCGCAAGCGGCAACACCGTGGA 26419 28 100.0 32 ............................ AGGTCGAGGGCCACCAGGTCGAGGGCCACTAG 26359 28 100.0 32 ............................ ACCTCGGCCACCTCGCTGATGCTATCCAGCGC 26299 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : TGTACAACCACCAACTGCCCCAGTCAGCATTGCACAGCAAAACACCTATGCAGGCCATGAAACAGTGGCATCAAACTCACCCTGAGTTGTTCAATAAGCGACCATATGATCGTCCGGGATGCAACAATTAA # Right flank : GCTGCAGCAAGTAGTTTGCCTCTACTTCTGCCGAAGGAATAGACCCTCAAGGCGCAGGCCTTACGTGCTGAGCTGTTGCCACAGGGCCAGTGCGTCGTGCAGCGCCCAGGGCGCAAAGCGCAGGATGAGCAGGTACAGCGTGCCCGTCCCGAAGGCGAAGAACAGCATGCGCTCAAACCAGCTGCCGGAGCGAAAGGTCAGCGGCAGGGAAAAGCGCTTCTTGAACGGCCACAACCACGGCACGCCGCCGTGGGTGGCGAAGTCGCCCAGCAGGTGGCTGAGGTAGCCCACCGCCACGCCCACACCGACCCAGTGCCAATGCCCGTGGTGGATCGCGTTCCACTGTGTCAGGGCTTGTTGCAATGCCCAGACTACGCCCACCACAGCCAGCAGGCTGTGGGTGATGCCCCGGTGCCCAAAGATGGCCGACAGGGGCAGCGATAGCAAAGGCAGGCGCCGCCCCAGCCAGCTTTTAGGGTGATCGATGTCGGGCAGCAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2729-117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNME010000003.1 Comamonas denitrificans strain MM2021_4 T_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2728 28 100.0 32 ............................ ATGGTGGGCGCGGGTTCCCCGCTTTGTTTACA 2668 28 100.0 32 ............................ AGAGATTGCGCTATCGAGATTAGAAAGCAAAG 2608 28 100.0 32 ............................ AGGTGCGTTTGCAGGGGCTGAATCTCGTTGCG 2548 28 100.0 32 ............................ GCAATCAGCTCGGGCGGCACGCGGTGGGCGGC 2488 28 100.0 32 ............................ AAGTACATCGCCAAGAGCGTGGGACACATTGC 2428 28 100.0 32 ............................ CAGCTTCAAACATGGCATTGACCTGCGCGATG 2368 28 100.0 32 ............................ TGGAGGGGGGAGGGTTTGTAAATCGTCAGATT 2308 28 100.0 32 ............................ TACCCCAGGAATTGAAAAATTCCACGGGGGTT 2248 28 100.0 32 ............................ ATGCCAACAGGGCTAAAGCCCTAAATGCCGCC 2188 28 100.0 32 ............................ GCCACGAAAGCGCCGACGGGGATGCGCACCTT 2128 28 100.0 32 ............................ TTTAGGATTGCAATCGAATGATCGAAGAAATC 2068 28 100.0 32 ............................ ATATATAGCAGCGCCGCAGGCCCCAGCCTTTC 2008 28 100.0 32 ............................ ACAGCCTCTGATTAGTGCGATTGCATCGCAAG 1948 28 100.0 32 ............................ GTGGTGGTATTCGGTGGACATGGGCGTGGTGT 1888 28 100.0 33 ............................ CCAAACCAGTTATAACAGCCTTCCCTCTGAAAT 1827 28 100.0 32 ............................ AGCAGCTGCGCTGCAGCGGGATCGCAGGCGGG 1767 28 100.0 33 ............................ GGAGGCGCGTAAAGGAAAGCGCTATCGGTCCGA 1706 28 100.0 32 ............................ GATCAAGGTGTTGGCGAGTTGATCTAGCGCGA 1646 28 100.0 32 ............................ CAAAGACTGCATATCACCCATGGCAGCGCGGA 1586 28 100.0 32 ............................ TTTACGCGCCTCCAGGTAGGCTGCGTGCAGGT 1526 28 100.0 32 ............................ CGCAGCTTTTTGGTCAGCAAAAAACCGGATAC 1466 28 100.0 32 ............................ GCCAAAAGCTGGCGCACTTTTGCCGACCATGA 1406 28 100.0 32 ............................ AAATCAGGAGTTAAAGAATAAACAAGGCTGAA 1346 28 100.0 32 ............................ TTGCCTTTCAGTACCTGGAAGAAAACAAACTC 1286 28 100.0 32 ............................ AGACCCTGAAGATGGTCAGCCCGTTTGGGTGA 1226 28 100.0 32 ............................ CCCGGCGGCCACCCTACGCGCTTTGAGCAGCT 1166 28 100.0 32 ............................ TCTGCGGGGTGCTCATACCCTTCGGGGCCAGG 1106 28 100.0 32 ............................ AGATGCGGCAGTGCCGACGGTGAACGCCTGGG 1046 28 100.0 32 ............................ CCGAAAGCCCAAAGACCGAGGGTAAACCCGTA 986 28 100.0 32 ............................ ATCAGGTTTATTTTCTGTTTTTGGCTGATGAT 926 28 100.0 32 ............................ CCTGCGCGGCTCGTCCAGCCTCCTTCCGACTT 866 28 100.0 32 ............................ AAAAACAACGGCGCAAACCGTTGTTTTATAAA 806 28 100.0 32 ............................ ACTTTCTGGTGGCGTTCCTACTGTCATTCAAG 746 28 100.0 33 ............................ ATATTTGACGGTCTTGTAAATGCTTTTGTCCCA 685 28 100.0 32 ............................ AGCTGTAGATGCAGGGGCACGGGGCGTTTGAC 625 28 100.0 32 ............................ TTGATGATCTCTGCCAGTGGTGCTGGCATCGT 565 28 100.0 32 ............................ TGAAAAAAAACAGCCCGTGCCTGCCGGGCAGC 505 28 100.0 32 ............................ GTCCCAGCTTTGCTGATCGAACACCGGCAGGG 445 28 100.0 32 ............................ AGCTCGCCCGTGTCGGTGGCGCGGCGCTCAAA 385 28 100.0 32 ............................ AGCTTTTGCCGTAAGCACTTGCTGTGCCCTCT 325 28 100.0 32 ............................ ACTTTCCGGCGGTGTTCCTACTGTCATTCAAG 265 28 100.0 33 ............................ CCCTAAAAAAATGGGGAGCCGTCGCCCCCCGCT 204 28 100.0 32 ............................ AGCAGCAGCTAAAAGAAAATCGCCCTGTGTAT 144 27 75.0 0 .................T-.T...TCCC | G [119] ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.4 32 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : CGCCTTGGAGGCACTGATGGCACAAGACTGGCTGCGCGGCATGCGCGACCATGTGGTGCTCACGCTGCTGGCCGCCGCACCGCCCAACGCGCCGCACCGCCTGGTGCTGCGCCGCCAGTTCAAAACCAATGCCGAACGCCTGCGCCGCCGTCGTATGCAGCGCAAGGGCGAAACCGCTGCGCAGGCCCAGGCAGCCATCCCCGACAGCGTGGAACGCCGCCCCGACCTGCCCTACGCCCACCTGCGCAGCAGCAGCACCGGCCAACCGTTTTGCCTGTTCATCGCCCACGGCCCCCAGCTGGCCACCGCCGTGGTGGGGCACTTCAACACCTACGGCCTAGGCCCCCACGCCAGCATCCCCTGGTTTTGACCCTTTTTTTACGTTAAAAATTAAATCTTTAAAAATCAAAAGGTTACGGTTTGCCCTAAAAAATTAGGGCAAACCATCTTCTGCCGCATTTGTTCTTTAAAAATCAACAGATTGCAAAGCTATACTTGCT # Right flank : CGGACGATCATATGGTCGCTTATTGAACAACTCAGGGTGAGTTTGATGCCACTGTTTCATGGCCTGCATAGGTGTTTTGCTGTGCAATGCTGACTGGGGCAGTTGGTGGTTGTACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2830-160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFNME010000065.1 Comamonas denitrificans strain MM2021_4 T_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2829 28 71.4 32 .GGATGC.A.A................. CACAAAAGGGCCGTGACTTCTACGCATGGCGC 2769 28 100.0 32 ............................ TTTTCAAAAAGCCCCATGTAGGTCGGTCACCC 2709 28 100.0 32 ............................ TGGTCAAGCCTTTTGCTGAGTTTGCTGGCTCA 2649 28 100.0 32 ............................ AGGGTATGCCGCTTGCCGGGAACAGCCAGCTA 2589 28 100.0 32 ............................ TTACTGCCCTTGCGTGGGCTTCGTGCTGCTGA 2529 28 100.0 32 ............................ CCGCGCGGCGTAGTGACAGAGGTCACGCCCGA 2469 28 100.0 32 ............................ GCAAGGTCAAGCCTGCGGATAGTGCAAGCGTC 2409 28 100.0 32 ............................ ATCGATTTCTTCTTTCCAGCCTGTCACTTTTA 2349 28 100.0 32 ............................ GTCAAAAAAATCCAGAGCCACATCGACGCGCC 2289 28 100.0 32 ............................ AAAAGCCGGGGCATTTGCAGCCACTGCATACC 2229 28 100.0 32 ............................ GCATTGAACGCTGCGCCCTTTACCGTCTTTCC 2169 28 100.0 32 ............................ ATTTGCGCCAGTCGTTAAATAGATCATTTAAG 2109 28 100.0 32 ............................ ACGCAAAAAGCAAAGCCCGCCCGCGCCGCCTC 2049 28 100.0 32 ............................ ATGGAGTCCGGCGAAAAGCGCTTGGAAATGGT 1989 28 100.0 32 ............................ ACAGCAGGGCAAAGGTCGGGCCGCCGTGCCAT 1929 28 100.0 32 ............................ AATCCCTATCGCGGACAGCCTCTAATTAGTGC 1869 28 100.0 32 ............................ ACCGCCCGCGACATGGTGACGATTGTGGCCAA 1809 28 100.0 32 ............................ AGATATTTGGCCTGGATGTTCCCAGTCTCTCG 1749 28 100.0 32 ............................ AACAGGCCGCTTGCGCGGGCCTGCACGTAGTC 1689 28 100.0 32 ............................ ATGCCGCCAATGCGCTCTAGCTCCTGCAAGAT 1629 28 100.0 32 ............................ TGCACCGCGATGAATGGGAGCAGCGCCGCACC 1569 28 100.0 32 ............................ GCGAACAGTGAAGCGCTTGAGCTAATGGAAAA 1509 28 100.0 32 ............................ TGGATGATCTGCACCTCGGTAGTGTCGATCTT 1449 28 100.0 32 ............................ TTTGCGCTGCTGTATGACGATGTGCAGAATTT 1389 28 100.0 32 ............................ ACCAAGCGTGCCCCACACGCCACGGTAAGACT 1329 28 100.0 33 ............................ CCATAAAAACACACACAAGGCGCACACCATGGC 1268 28 100.0 32 ............................ TCTGCGCCAAGCCCGGATGCGGATTTATCCGT 1208 28 100.0 32 ............................ AGCGCGTGAATTGCTGCATCCATGGCGCTGGC 1148 28 100.0 32 ............................ GACACCCGCAAATGGTTAAGGTGCTGCCACTT 1088 28 100.0 32 ............................ TAAACCGCAGCGCCGACGTTTACACAATCAAC 1028 28 100.0 33 ............................ CGAGAGCAGAACGCACAACTTCAAGAGCTTGAA 967 28 100.0 32 ............................ TTTTCGTAACGTTCCACCCTTTTGGGTAGTGC 907 28 100.0 32 ............................ TTCACCTGGGCCCCTGATCGCAGCGAAGCGGA 847 28 100.0 32 ............................ TCTGAGTTTGTACTCATCAATCGTAATGAGAT 787 28 100.0 32 ............................ ACCAGGTCGAGCCACCAGGTCGAGCCACCAGG 727 28 100.0 32 ............................ TGGGGGAAAACATCATGGCGATAGCAAAAAAC 667 28 100.0 32 ............................ TGGGCGTTCTAATCACCGAGGCCAACAAAAAT 607 28 100.0 32 ............................ TTGGTAGTGCTCTTCGTCTTCCGTCCACTCCT 547 28 100.0 32 ............................ CTTGGCACCGCCAGCATCCAGTTCATCGATAG 487 28 100.0 32 ............................ TCGTGCTGCACGGTCGATTACCCCGGCGTGTA 427 28 100.0 32 ............................ AAGACATAAAAAAAGCGCCAGGGTCAGCGCTT 367 28 100.0 32 ............................ AAAAAGACAAGCCGATAGTGATGCGGGTCACG 307 28 100.0 32 ............................ CTGACGGCGGCATAATGAAAAAGCCCCGCAAC 247 28 100.0 32 ............................ TGAAAAATCGACGGGTGAAACTATGGGCAATG 187 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.4 32 GTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : TTGTGCAGAGAGATTTGCATTACAGGCTCCTGGTTGATGGCAGGGACTCTATCAACTCCCGCAGCACGGATCGCGCCATAAACAGCGGATAGCGATTTTTATCTATGCAATCGTC # Right flank : ATAAAGGCAAAAAATGTAGCAACAAGAATTAAATGTCGCATCCCGGACGATTGCATAGATAAAAATCGCTATCCGCTGTTTATGGCGCGATCCGTGCTGCGGGAGTTGATAGAGTCCCTGCCATCAACCAGGAGCCTGTAATGCAAATCTCTCTGCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //