Array 1 154683-152718 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXP01000008.1 Salmonella enterica isolate STY45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 154682 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 154621 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 154560 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 154499 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 154438 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 154377 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 154316 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 154254 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 154193 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 154132 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 154071 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 154010 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 153949 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 153888 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 153827 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 153766 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 153705 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 153644 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 153583 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 153522 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 153461 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 153399 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 153296 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 153235 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 153174 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 153113 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 153052 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 152991 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 152930 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 152869 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 152808 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 152747 29 96.6 0 A............................ | A [152720] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172307-170814 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXP01000008.1 Salmonella enterica isolate STY45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172306 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 172245 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 172184 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 172123 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 172062 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 172001 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 171940 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 171879 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 171818 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 171757 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 171696 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 171635 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 171574 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 171513 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 171452 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 171391 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 171329 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 171268 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 171207 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 171146 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 171085 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 171024 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 170963 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 170902 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 170841 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //