Array 1 74429-71489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOK010000004.1 Lacticaseibacillus paracasei strain N53 No53_ctg004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74428 36 100.0 30 .................................... CAGTCATGTGATACGTCTGTGCTGACATCT 74362 36 100.0 30 .................................... TGAGCAATGAGGCGAAGCGGAACGTGTTTG 74296 36 100.0 30 .................................... CTGACGATTCGCGTTACTACGATCCAGAGT 74230 36 100.0 30 .................................... ATTAACTGATTAGAATTCCCCCCAGAAGAT 74164 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 74098 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 74032 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 73966 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 73900 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 73834 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 73768 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 73702 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 73636 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 73570 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 73504 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 73438 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 73372 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 73306 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 73240 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 73174 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 73108 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 73042 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 72976 36 100.0 30 .................................... GAGTTTTAAGGTGATCAGAATGTATCGAGA 72910 36 100.0 30 .................................... AATTCTTGACCCCATGATTGAGACGTATCT 72844 36 100.0 30 .................................... TTCGTTGATGAGATGATCGAGCATAAACAA 72778 36 100.0 30 .................................... CAATGCCGGGGGTCCAACCATAGCCTGTGT 72712 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72646 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 72580 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 72514 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 72448 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 72382 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 72316 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 72250 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 72184 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 72118 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 72052 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 71986 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 71920 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 71854 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 71788 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 71722 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 71656 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 71590 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 71524 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 45 36 99.6 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTTATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //