Array 1 2442476-2442268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027657.1 Pseudomonas mendocina strain NEB698 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2442475 28 100.0 32 ............................ TTGCGTGAGGCGCGGCAGACGCTGGAGGAGGC 2442415 28 100.0 32 ............................ TTCATCGCCGCCTGGGTTTTCTTGTTCGCCGC 2442355 28 100.0 32 ............................ TCCCCATTACCGGGAGTGAGCACAGTCATGTC 2442295 28 75.0 0 .....................AATTGGC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGCCCTGGACAGGCTACTGGCGCTGAACTGGCTCACCGGCATGCGTGACCACCTGCACCTGGGCGAGCTGGCGCCGATCCCCGCGCAAGTGCGCTGGCGTTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGTATCAGCGAGGAGGAAGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGTTGCGACCTGCCCTACGCCACCTTGCGCAGCAACGGTAGCGGCCACAGCTTCCGCCTGTTTATTCGCCACGGCCCGCTGCTCGACACACCAACCGCAGGCACCTTCGGCGCCTATGGCCTGAGCCCACAGGCCAGCATCCCCTGGTTCTGACCCTCTTTTCTGACCACAACCGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAAGCCGGGCAACGCAGAGGAGGTTCTTTAATAATCAATGTGTTAGCGACTTTTAGCGCTA # Right flank : GGGCTGTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAGCATCCATGTCCGGAACCAAGCAGTTCGCTTAAGCGGGATTGCAGATACGACTCGCTGCCGCACGGGCTTTCAGGCGTCCAAACTACGAAACATCACATGGCAGTCCACCAACCCATGTCGCGCATGGCGATAGGCCTTGGGCAGGGTGCCGACGATTTCGAAGCCGTGCTTCTGCCACAGCGCCACAGCGACCTCGTTGGTCGAGACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAGCTGCCGGGCCACATCCAGCGAATGGGCACAAAGCTTACCGGCGATGCCCTGGCCACGAGCGGCGGGGGCGGTCATGTAGCCGCAGTTGCACACGTGATCGCCCGGCCCGGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGTATCTGCCCGCCCTGTTCGGCAACGAAGGTCGCGCGCGGCAGTTCGACCCAGGTCTTCCAGGCGGTTTCACGATCCATGTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2453004-2452736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027657.1 Pseudomonas mendocina strain NEB698 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2453003 28 100.0 32 ............................ ATGTGAACTGCGACGAGCTGGACGAGTTCGAG 2452943 28 100.0 32 ............................ AGCCGCCCTCGCGATCCATTTCGCCGGCCGCC 2452883 28 100.0 32 ............................ TTCTACGATGATCGCGGGATCGCGAAGGTCGT 2452823 28 100.0 32 ............................ ACGGTCACCCTGACGGCAGACAGCAGCACCGC 2452763 28 89.3 0 .......................C.C.C | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 CTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GCCAATACACGCACAGGCCTGTCATCAGCAGATGGCTGATCCAGTTCCTCACCCCGTAGCGCAGCATCCACTCACCCAGGTTCTCCATGGGCGAATTGAACAGCAGGCCGGTGATCGTCATCAGGATGCCGATCACCCCGACCAACAGCGCAACGCCCACCAGATAAAGTGGCAGCGCGGGAGACTCACGCGTAGCGGCAGGTGCTGACGGCGGGGCAATGTCGAAAGGGTTGGCCTGGGTCATGAACGATCCTTGTCGTTAGATGCATGTATCGAATGTGCGCGAGCATAGCCGCCATGCCTTGCAGGCAAAAGCACCACCCACCGATTGCGTGCGGCAACCCACATGGGCCTCGAAACCGGACTAATACCCTTTTTCTGAGCCCATACCCAGTCTCTTTAAAAATCAAAGAGTTGGAGATAGCCCTGAAAAAAGGGTCAAACCGCCAGAAAAGGGGCTCCAGCGTTGAGAAACAGCAACTTGGGCGCTATCGTCTCTA # Right flank : TTGGCACCTCGGATCAAAAGGGCTTAACTGCCAGCATTGCCCTGGGAGCCCTTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCACTCCAAGCGCGCCAATCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTCACCGATGCAGGCAAGCAATCGCTGTACTGGAATATCCCCATCGCCAACACCACCACCATCCTGCTCGGTACCGGCACTTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTAGGTTTCTGCGGCGGGGGCGGCACACCACTGTTCTCGGCCAACGAGATGGATGTGGAGGTGGCCTGGTTCACGCCGCAAAGCGAATATCGCCCGACGGAATATCTGCAGAAGTGGGTGAAATTCTGGTTCGACGATGACCAGCGCCTGGAGGCGGCCAAGGCCTTTCAACTGGCACGGTTGCAACGTATCCGTCAGGGCTGGCT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTACAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4325906-4325338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027657.1 Pseudomonas mendocina strain NEB698 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4325905 28 100.0 32 ............................ ACGCCAAGCCATCGGCTGACCCGGAAGCGGCG 4325845 28 100.0 32 ............................ ATCCAGCCCCTTGAGTGAAAACCTTCGTGATT 4325785 28 100.0 32 ............................ AGTCAGCGCCAACCTTATCAAAAAGAGCACGG 4325725 28 100.0 32 ............................ TGAACCCGATCAGGTTTGCGCCCAGCGTTGGG 4325665 28 100.0 32 ............................ CAGCTCAGCGTTGTTCTGCAGCAACTGTTCGA 4325605 28 100.0 32 ............................ GTTCAGGTAAGCGCTTACCGCCCCCTGGCTAA 4325545 28 100.0 32 ............................ ACGTCGCTGCCGTTCCGCGAGCAGAACGAGTT 4325485 28 100.0 32 ............................ ACTGATGGTGGCCATCAAGAACATAGCCATCC 4325425 28 100.0 32 ............................ TTGGTGGCTGTTACCGTCGTTGAAGATGTTCA 4325365 28 71.4 0 ............A........AGTTGTC | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.1 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GCCCCAGCGCCAGCGTGCCGGCTCCGGCCAGGCAGTCGATGAAGGTACGCCCTTCCACATCCTCTACATGGATACCGCGGGCACGCTTGAGCGCCAGCGGAATACGCCGTGGATAACTGCGCGCATTGGACTCCTGACGTGCCTGTCGCTCCAGCAGCGGCGACTCGGTGAACTCGTACAGCCCTTCGGCCTCTTGCAGCGGTTGTTGCTCGATAACGCTGGCGGCGACATTCATGATGTCTCGAACCCTCGGTGATGTGGCACAAGCCACGGCAGACGGATGACCGAAACGCATACGGTGCATTTCGATTGGCACTGCAATGAAAACGCAGGAGGGTTGAGCGGATTTATACCTGGGGTGGTGTTTCGACCCTTTTTTCTGGGCCTTTACAGGGTGCCCATGAAATCAAGCACTTACGTAGGCGTATAGAAAAAGGGGGAAAATCCGGAATATAGCCTTCCCCCCTTCAAGATCAGTGGGTTGGCGAGTAGAGTGGCTA # Right flank : GGGATGCTCGCTTCGTGCCTGCTTTCGTAGGGCGTACCGGGCGGCGATCCGTTCGCGGAGCAGTACGCCGTTGTGGGTATCTATCGAAGTACCTGCGAAAGTGGGTACCAACGTCTACATGGGTCGGCGGAATGTTCGCTGGCGCTACGAGTAGCCAGCGTCCCGATCCGACTTACCGCGCTGTCGTGTAAGTAGCAAAGCGGCGCCAATCCGGCGGTGCGCACCGGGCACCCTACTGGGAATCGCAGAACCCCAGCGCCCATGAATGGGCGCTGGGGCTTGCGACTACGACTCCTCCAGTCTCGCCATCAGGTCGCTCAGGCGGCTGGCCTTCTGCTCGCTGATCGCGCTGTTTTCCAGCGACTCGATATAGCTCGCCAGTTCCTCCACCGTGCTGCACTCGAACATCGCGCGCAGCGGCACGTTGCGCTGCAGAGCCTTCTGCACCCGCGAGGCGATCTGCGTGGCCAGCAGCGAATGCCCGCCCAGTTCGAAGAAGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //