Array 1 3606-5159 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLPY01000040.1 Streptococcus iniae strain QMA0458 NODE_2_length_97766_cov_125.888_ID_1415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3606 36 100.0 30 .................................... AAGCGGAACAGATGACAATATATGATTTTT 3672 36 100.0 30 .................................... GCTGAAAAGACTGCTGTACTCGTTGGAATA 3738 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 3804 36 100.0 30 .................................... GGTCAGATACGCTCAAGGTCAAACAATTGT 3870 36 100.0 30 .................................... TGCAACAAATAGCCTTATTATTGCTTTTAA 3936 36 100.0 30 .................................... TCCTTTTTGAGTAAAAGCTATTGTCTCATT 4002 36 100.0 30 .................................... TATACGACTATAAACAGTTGCCAGCTTCAT 4068 36 100.0 30 .................................... TATGGAAAATGTTGACTTCCACGGTAAATC 4134 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 4200 36 100.0 30 .................................... GTTTGATGATGTTGTCTATACAAATACTGA 4266 36 100.0 30 .................................... TTTGATACGATCTATGTCAGCGAGCATTTG 4332 36 100.0 30 .................................... GTTTTAGCTTTTTTAAATTCTTCTTGCTTC 4398 36 100.0 30 .................................... GTGGCATTTTTGGAAATAGTTAGACAATTA 4464 36 100.0 30 .................................... AGGTGTCAAACTTATCACAGCTCTTGTTCA 4530 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 4596 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 4662 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 4728 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 4794 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 4860 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 4926 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 4992 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 5058 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 5124 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 98.8 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //