Array 1 12690-12356 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZI01000015.1 Levilactobacillus spicheri strain NBRC 107155 sequence015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12689 29 96.6 32 ............................C AGCATACCGCAGAGCGGCGGGCTTTGGAAGGG 12628 29 100.0 32 ............................. ACCACTTTTGGCATCGGATAGATCACGATAAC 12567 29 100.0 32 ............................. AGGTGTGGCCGACGAGGTGCTTAGTGTAATCA 12506 29 100.0 32 ............................. GACGGGCCGGTCAGCGTCGATATTAAAAAGTT 12445 29 93.1 32 ...............A..........T.. TCGGCATCCAAAGACCGATTGCCATCATAAGA 12384 29 75.9 0 ...........G.A....A....T.ATT. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTATTCCCCACACGTGTGGGGGTGATCCT # Left flank : CCTGTATTTATCTTCGGCCATACTGATAAGGGGC # Right flank : CAACCTGCTTCCATCTCACCCCTTAGCCACTCATTAGCCGTCTCTTCAAAGAACTGCCGGAAAGCCACATAGGCGTAGCCCTGCCAGGATTGGCGGTTCTTGCGGTAGGCCGCAGGGATGATGCGAGCAATGGCTGTGTGTAGATTTTCGATTAGGACCGAATTATGTTCTAGCCGCGTGGCCAAGCGACCAGAAAGGCCCAGCTGAGCCTCGGCCATGCGACAGACCGCCGCTTTGGCTTGGTAAATCACGCGCGCCATCTCATAGAGTCGTGCGTGGTCATGATCGGCTAAAGCTGCCATTAGCTGAGCTGTTGTCGTGGGGATTCCGCCCACAGTGGTGAGCGATTGGGTTAGATTGGTAAATTCCAAGTGGGTGAGTAATTTTTCAGACGGCTGGCCGACGGATGGGGCTATCTGAGACGAACTTAATGCCGCTTGGTTAGCGCCAGCTGAGGATGATTGTGCGGAAACGCTAATCGCTGGGCGCGTATTAAGTGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20360-21243 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZI01000018.1 Levilactobacillus spicheri strain NBRC 107155 sequence018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20360 29 96.6 33 ............................T CTGCTGGGCGAATACGTCGACAACACCACTTTG 20422 29 100.0 32 ............................. GGACAGGATCGTCTGACGGTACAGCGTGATAC 20483 29 100.0 33 ............................. AAAGTTAGAGACCGTTAAAGCCAGTTCCTTGTC 20545 29 100.0 32 ............................. GACCCGTACATGGTTCGATACCAAGCTCTGGT 20606 29 100.0 32 ............................. GCCTACACGACGGCGTTGGACGAACGAATCAA 20667 29 100.0 32 ............................. CAGTCTCCGAGTTGGACCTCCAACCCGTCTTT 20728 29 96.6 32 ............................T GTGATTGTCGTTATCTTTAAGACCATCATTGA 20789 29 96.6 32 ............................T AGAGCGTTCGCCGCTAAAAACGGTGTGGAAAT 20850 29 96.6 32 ............................T GATAAATTCACAAAGTTGATTAAAATTCGGGG 20911 29 100.0 32 ............................. CAGGTCAGCCATGACCCGGCCAACTATCCTGA 20972 29 100.0 32 ............................. GATAACGGCAAGCCTGACCCGGTCTCACGCCG 21033 29 96.6 32 ............................T GGTTCGAGGACATGCGGGACACCTTCAGATGG 21094 29 100.0 32 ............................. GAGGCGGCGGCCATGGATGCCAGCTTAATCAA 21155 29 93.1 32 .........................C..G GTTACAGTCAGTAGCAGCGGTCTTAAGGGTAA 21216 28 75.9 0 ...........G.A........-A..TTT | ========== ====== ====== ====== ============================= ================================= ================== 15 29 96.8 32 GTATTCCCCACACGTGTGGGGGTGATCCC # Left flank : TGATTTCACCCCTTAATTTATGTCTGTCAGTAGACTAACTGAAACATTTTGAGAATCTTTGGGGTTGGCGACAGCGTCGGTGCTTCTGAAGCAGTGACTATGTAAGAATTGATTCAGAAGGAACCTCAAAAGATAAATTTATAGATGATTAATTTCACTTCCTCCTATATTTAATAATTAAACATTAACTGATAACACCAATTATAGTATATATTCAATTGATCAATTAGAGCGCTCAAACGGTTCCGTTTAGGGGACGTTTTGACAAAAGTGGGGTCACGGTCAGGAAAAATTGATTGTTTTCGATTAGATATTCCCCCTTCATTGACTGGTTGAGCGCACGATATTTTTCAATGAAGCGATTAAATGCTGATTGGGTAGATGTGATTAGAATTGCTGGTGGGCTAATACGGGCGTATGATGAATGTAGTAAATTGTAAGTTAATGAAAATACGGCAATGATGATTTCTAAAACGTTGATTTAACGGTATTTACTTAGT # Right flank : TCTCAGAAGCAAAAGTGACCACCTTTGGAATATTAACGAAAATAGCCTAGAACCCGCCATCGCTTTAACGATAAGGAGTTCTAGGCTATTTATTGTCGTTTTGAATCAATAAACCCACTGGTCGGGTTTCCGGTTTACATATGAACGATTGCGCCACCATCTTTAATGTGAGTGGTCTTCTTAGCGGGATTCTTCAAGCTGTACTTGAAGGCGTTCATCTTTTCTTTTTTGTAGGAAGCATAGTCGGTGAGTAGTAACAACTTGCCCTTACGGTAAAGAACGCTGTCACTATGACCGCCTAAGACCATGCCACTTTTTTGGGTATGGCCCACGATACGGTAGACGTGAGTCCGCAGCTTCTTATACTTAAGATTGACCGTCTTTATTTGGGACATATTGGAATATTGAATGATGTAGTGCTTGCTAGCAATCTTGTAAAAGTAGCCGAATCCCTCAGCTGAGCTGGTTCGCTTACCTTGGTAAGTGCCCCGTAAGACCTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 304-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZI01000016.1 Levilactobacillus spicheri strain NBRC 107155 sequence016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 303 29 100.0 32 ............................. GCCGGCGAAAGTTACGTCGTGAGAGCCAAGGA 242 29 96.6 31 ............................T ACGCCCCGGCACACGATGAAAGTCAATCTGC 182 29 96.6 32 ............................T CCGTTGGCTTTTCTGCTACCCAGGGGGATGCA 121 29 100.0 32 ............................. AAGTTTTCGTGTTGCGGGAAGTTCTTCCCGGT 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTATTCCCCACACGTGTGGGGGTGATCCC # Left flank : TTCCAGGACGTGATAATATCGATTGGGGCGGTGAAATCGGGGGCCAATGGGGATGGCGACACTCTTTACCGGTTGATTCAGATTGAGCGCCCAGTTCCACCAGCGATTACGAAGCTGACGGGCTTAACAACGGAGATGCTGATGGAGCAGGGAGTGCCGTTAAGTAAAGCTCTGGCAGACCTGCGCCAGTTTGTGGGGTCGGCACTGATTGTCGGGTACAATTACCAGTTTGACGCGTCCTTTTTGGCTAATGGGTTTAGACGCTTGGAGCAAGCTGATTTAACCAATACCACACGGGACCTTTTACCGATTGTGAAAACGGCTAATCAGTTCTTAGATAATTACCGTTTGCCAACGGTGTTGGCGGCTTACGATATTTCAAATGAAACTCCGCATCAGGCTTTGGCGGATGCGCGCGCCACGCTGACCCTCGCACACAAGTTAATGAAAACAGGCGATTTGTCGATTTGAGAATGCCGGTATGACAGGGATCCTTTAGT # Right flank : CCATTACTTCACCGCCCTTACACCGACCAGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10792-10154 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZI01000016.1 Levilactobacillus spicheri strain NBRC 107155 sequence016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10791 29 96.6 32 ............................T TCGGTTCGCATCGACGAAATGAGCAAACACAC 10730 29 100.0 32 ............................. GACAAGCCAAACAGCCGTTTGAGTGCCAGTGC 10669 29 100.0 32 ............................. TAGCCCACGCTGATGTGCCGTTCCCCATCATG 10608 29 100.0 32 ............................. GATATTAAGGGACTTACGTGGGACGACCTGGC 10547 29 96.6 32 ............................T CCGTGGTCACGAACTGAACGAGCAGCCTATCA 10486 29 96.6 32 ............................T GGCGTTATGCGTTTCACAAGTACAAAAAGCGG 10425 29 100.0 32 ............................. GAAGGTGTACTTCCCCATCATGTGCGCCATGA 10364 29 96.6 32 ............................T GCCCGGCCGCTCTCTGCTGTGATGAGTGGCAC 10303 29 89.7 32 .......................A..T.T GGTGAGGTACCTGTGATTTTATTGTCGGCCCA 10242 29 82.8 32 ............T.....A.....G.TT. TAACAGGGGTCTTTGTCCAGCTTGCAAGCAAA 10181 28 72.4 0 T.......-..T.A......A..A..TT. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 93.8 32 GTATTCCCCACACGTGTGGGGGTGATCCC # Left flank : CCGTTGTCGCCGATTGAGATGGAGACCATCAACGATTGGTTGAAGCAGGACCACTACCAACCGGAGCTGATCCAGTTGGCGCTGAAGGAGTCCGTTTTGAATCAGGTCTATAACTTGAAGTACATGGACCGCATCCTGGGTAACTGGGAGAAGAAAAACTTACGGACGGCCGCGCAGGTCCAACAGGAACGGGCGCGTCAGGCCGACCGGCAGGCACCGAAGGCGGGCGCCCCGGGTAACGGGGGCGATTCAACGATTCCGGACGTGCCGATTTTTAAGTTAACGGATTAGGTGAAGGGGTCGCGATGCGAGAGTACGCGGCCTTTTTTGATGGGAGAATGAGATGAAAATCAGTTTAGACGATATTTTACGTGTCAGGGTGAACAGGGATTGGCATTCGAAGAATTTTTAGGTATGCTGGGGTCATGGTCAAAACACAAGTTAATGAAAAACGGCGATTTTGGAATTTTAAAAGGTTGATATACCGGGATTTGTTTAGT # Right flank : CATCCATTTTCCCCGTCCATCACGTGTATTACGTATTTCCTCCACATGTAAGGGGCAGTATTCTTCATACGAAACAGCAAGTATCCGAGGAAGATTAGATAGAAATGCCTTGAAAGTTCTGAACCTTAACCGAGGATCAGAACTTTTTATGTATCATGGAAACGATGCAAGTCAGCTTAAGCAACTATTTATTTGGCAGAATGCGCTGTGATTGGCAGCCGTAATATTCTAAGGTATGCTAGGCCTACGCTTTAGAACCGAACGTTTTTGCTTCCTGAAAAATTGATGCATTGGAGACTACGGAGTATGAAGAATGTCCTCGAATATGCAACGTGGTACTAAGCGTTAGAAATGAATATTTATTAGAACGTAAACCATTACATTGCAGAATTAGAATAACAGTGTAACTGATAAGCGAACTACTTGTGAAGAGGATTTTCACTGAAATGTTTAAAAGAGGAGCTGATAAAAATGACCCCATCCCTGTTAGCAGCGACTTT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62297-62630 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZI01000010.1 Levilactobacillus spicheri strain NBRC 107155 sequence010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62297 29 96.6 32 ............................C AAATTGGCATTGAACTGGAGTACCAGCTTAAA 62358 29 100.0 32 ............................. AACCGCCATCGAGGCATGGACGCGGGTAAATC 62419 29 100.0 32 ............................. CGAAGCAACACTAATTGATAAGCTCAATCAGG 62480 29 96.6 32 ............................C TATACGCGAAAATACCGATATTCGCTAACGGC 62541 29 100.0 32 ............................. CAAAGGGAATTTTACCGTTATTTTCCGAGATT 62602 29 79.3 0 ..G.........T..A..........TTC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GTTCCAGACCTACGCGGCGACCTGTGCGTGGACGCTGGCCATGGCTCACTCACAGAGCCCGACTGCGGCCATTATCCGGGGCTACATCGGCGGTAGCGGCAAGACGCTCGACAGTGAGCTGGCGAAGTTCGCCTGGGCGTACACGGACCAGGTTCAAGCAGATTATCAGAAGTTTTGTGAGTACCGATTAACGGATTAGTGAAAAGCGCAAAATCCCCTGGGACTTGATAAAAATCAAGCCTCAGGGAATTTTTTTCACCTACTCATAGCGATAAACAAAAATATATTGAATGAAGAATGTGTTTTTGCTAGGCATGGAATTGCAGGGGAATCAGTCTAGAAAAGATATTTTTGTGTTGCTTGAGTGGATTCTTCTGGTGGGAGACGTTGCCCTTGGTAGCCGATGGAGAGAGGCGTATGATTTGTTTAATGGGAACCAAGTTAATAAAAAACGGGAATCTTTGATTTTGAAAAGGTTGATATAGCGGGATTTGTTTAGT # Right flank : CATAGTTGGCCTAATTGCTTTTTGATTTACTCTGTTAACAAATTCCTAGACTTTCCTGCGCATATTCTGAAGTAGAAACATTGAGTGGTGACGCAAGATTTTACGATAAGAGTAGCCTGGAATCCCAGTAAATAGCGATATACTAGTGAATTTAGCTCTCTCGCCAGCACAATTAAATTGATGACAATTGATATACTCCCTGATAAACTATAAAAACACTAATCGGGGGAGTTTATAGTTTATGAAGCAGCATCACTTTTTACGACTGGCGGCTAAAGCAGCCTTGACACTCGTCTTAACGAGCACAGCGCTACCACTTATATCGGTTGAGGCATCTAGAGTGCAGATTAAAGAGCCTACAGCTGGGATACAGCCAAGGCAAAATATTAAATTTCAGGGAAAAAAAGCGACGTCTAGATATCTAAGCAATGCCTTTGATTTGGGCGGTTATACGACAGCAAATGGCAGGTGGAAAATCCGAGAGAATCACTTGATACGGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //