Array 1 125286-125848 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHL01000004.1 Lactobacillus sp. ESL0263 Ga0226842_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 125286 36 100.0 30 .................................... ATTAGTAGACAAATAAAAACCGTTCTAGTA 125352 36 100.0 30 .................................... TGGCTACATGGGCACAGGACCAGAAGATGA 125418 36 100.0 30 .................................... ACCCTTGATGATATAGAAACTAAAACTGGT 125484 36 100.0 30 .................................... AATGGAAATTGATTCTGTTGAGTATAAATT 125550 36 100.0 30 .................................... CACGGAACTCGATTAGCTTCAACAACTGAG 125616 36 100.0 30 .................................... GATTATCAGTAATCGGTTTGCTATTAGCAC 125682 36 100.0 30 .................................... ACCCGTTAAACGATGGAGAAAAAGATGAAT 125748 36 100.0 30 .................................... TGGATGGCACTACAGCGGGTATAGGTATCA 125814 35 80.6 0 .......................-A.CA..G...CT | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 30 GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Left flank : AATGGGTGAGTTTTATGCTGGTCAAGTCGTGGCTGGGTATCAAAATGCGCTTGATGTTGATGGTGACCAGGAAATGATTGCCCGTCGGCAGAAAGTCAGTGTTTCAGAATATGAGCAAATTTTTACTCAGGCACTTGAACTTCCTCAAGATAACCTTGAATTAGAAAGCGATGAAGAAACCGGTTATTGGTACTTTGCTGGAACTAAGGATCACGTTCGTCAATACAAGCAAAAATAAATTTAGACCCTAAAGTTGGGTCTTTTTTTGTGCACATTTTTATAAAAAGTGAAATCAAAACAATAAGCTAATTAACCCTTGTGCTATAATTTAGGTGATTTAATTTTAGTCTAAAAGTTTTTGAACTAAAATTGTAGCTATTTTTTAATTCAAAAGCGTGTTTTTCGCAATTACGAGGTAGTTGGGTTGACGAAAAAAACTTTGATAATTGCCGCAACTATTTTTTGATAAGACAACATTAAAAAATGATGATAAAAAATCG # Right flank : TAATACATAATTAAAAGAAGGCTAAAAATAGAGGCACTAAAATGATCAGTGGAAAGCAATATAGCCAGCAGGAGGAATTAAAAAAGAATCGAAGGGAAGCCTTTAAACGAGCAGGCATCCTTACTGATGAAAAATTCTATAGGCTAACGACAAGTGAGCGACTTGAATATGTCGAAAAACAAAATGCGTTACATATGCCAGTAACTGTAGAGCGTGACACACCTTATGATGCTAACTTTCAAGTGAAAAAATCAGGTAAAGAGAAAAAAGTAGCTGTTGACGCTAAGATTAGACATGCACAAACTAAGGGCATTATCATGAACGCTTTAGGTTTATTAGCCCTAATTGATATAATCCATAACTGGTGGGGACCTTCAAAATAGTTTCATTTTCTAAGAACAAGTGGTTATTACCTAGCCTAGGAGAAGACAAAAGTTACTAAACATTTTTAAAATTTACCGAAGTGTATCAGCTTTTGTTAGGATTAATTTATAATTGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 167441-168068 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHL01000002.1 Lactobacillus sp. ESL0263 Ga0226842_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 167441 36 97.2 30 ...C................................ GGAGTGATATTTATAAGAAATGAACATTAA 167507 36 97.2 30 ...................C................ CCCATGTCTTTGAGATACTTCATTAATTGG 167573 35 94.4 30 .........................-C......... ACGATTACCAATACTATCAAGGCTATCAGC 167638 36 97.2 30 .C.................................. GCAAGGTTTAAATAGTGATTGAAATCATCA 167704 36 100.0 30 .................................... AAGTCTCCTGCGTTCTCGTCCAAACCGGTA 167770 36 100.0 30 .................................... GATTAACTCACGAATTGTGATTGAGAGGTC 167836 36 100.0 30 .................................... TCCCAAATCTCATGACTAGTTAGGATAAGA 167902 36 100.0 30 .................................... ATAGAAATGAGGTCAAGGAATCCACTGCGA 167968 36 97.2 30 ....................A............... TTAATGTGTGTCGCCTGAACGTCAGGCACT 168034 35 91.7 0 .........................-C.......G. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Left flank : TGAAGACATTTCAAAAAGATATTTAACTTTTGTAGTTAATAATTATGTAAAGACTATAGACGAAGAAAACAGAAATAAAGCCTTTAAAGCTTATTATAACCTAGGGGCTGTATTGCATGATTCACTTTTACTAGAAGATCTTCCTATGGACATTGACTTTAACAAAGATTTGAAAAAGCTATTAAAGTTGTTGGAAATTCATTTTGATAGGAGTGTATTAACCAATCCATATGCTACAATAGAAACTGTTCTAAAAATTCATCAGAATTATGATTTGGGGACAATTCCTGTATTTTTTGTAATGTAGCGCATTATTTTGATGAGCAGGAATGGCAAGAGGTAGCTAATCTTGCTATGGAAGTAAATTCAAGTGTGATTTTTCTTGAATTTACTAATCCTCAAAATTTGAAAATATCTAAAAATATTACTTGTTATTATATAGATCAAGATCTAGTCGATTGGTACTAACTGCTATATTAAAATTTGATGATAAAAAATCG # Right flank : CTGTTTTTATTAATATTTGTCAAGATCTAAATCAAATAGTGTTTCAATATCTGTATTAAAATACTTTGCTAATTTGTATGCAATGTTAATGGTTACATTGGTTTTAGACTTATTACTTTCTATCTTTCTAATATAAGCTACTGATACACACAGTTACAGTGGCTAAACTTTCTTGTGATATTCCGGCTAAGTGTCTAAATTCTGCTAATCTGTTGTGCATTATTACGCTCCCTAAGTGGTTTTTTGTTGGGTTCAGTATATATACTATTTTATATGGAAGTCAAGCTTGCGGCGCTTTGTCAATATAGTGATAGCTAGTGCTTGTGCTTTCATGTATTTAAGGCTTTAGGTAGCTGTTAAATAGACGATAATTAGAAACAAAAAGCCTCTTTCTTCAATTAATTGAATTAATCCATGACATAGTACAATTACATAAAGAAAAAAACGCGCCAGATAGAGCGCGCTTTTATTTTGCTAAAATAAAGTCTAAGTATGACTAG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //