Array 1 11846-11082 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 11845 30 100.0 38 .............................. TGAGCAACTTGCACAAAATTTGTATTACATTTTCGTAA 11777 30 100.0 39 .............................. ACACCCCTTTCAAAAAAAATAGAGCGGTTCCCACCGCCC 11708 30 100.0 38 .............................. CTACAAAGAAATCCATCGTCAGCTTCATCTTCTCACCA 11640 30 100.0 37 .............................. CGCTGAGCGAGCAGCTGAAGAGTGGTATGCAGCTTAG 11573 30 100.0 37 .............................. AAAATTATGCAATACAAATAAATACTGCAATTACAGA 11506 30 100.0 36 .............................. ATATTTCATTTTCATCTAAAAGTTCTTTAACTAATG 11440 30 100.0 36 .............................. TTTTCGTATTGTAATAAAAACAATTCCTTTATTTCT 11374 30 100.0 35 .............................. GGTACTTTATGGGTAAATATTGGTGATACATATTG 11309 30 100.0 36 .............................. ACCTTATGGCAGATAGGAAGAAATACTACAAGGAAA 11243 30 100.0 37 .............................. GTCTTTTCTCCAATAGTGCTGGTCTGAATCCAGCATT 11176 30 100.0 35 .............................. CAAGTCGTTAAGTTCCCGTTATCATAGTAGCTGTA 11111 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 99.7 37 GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Left flank : TCTCTCCTTTCATTGATTTTTATTTTGTTCAACATATCTATATATACCCAGAAAATTATTATATTCTATCAATAAACAAAAAGATACAAGTGAGCAGATTTTAGCATTCATTAAAAGAACCTCTAAGAGCTCACATAAGGCTTTATATCCTCGATTAATCGAATATTTTTAATTTCATCTCTTAAGGTTTTTTACTTTTTAACATTATTGGTCCAAATCAATTTTATTCAAAAAGATATGAATATATATTTACTTTGACTAAAAGTCACTTCCGTCGATCTCCAGTGCAAAATTTTTGAGGTTTGATTTGTATACGGTTTCATCAAGATGTGGTAAGGGTTCGTCTGGATTGCTGGCAACAGCTGGATAGACGGAAGGGTTTTATGGGGATCGAAACCTTGGTACTTCTTATTTGAGTGGCATTTTGATATGGTGTACTAAAATAAAAACATTGACACCTTTGCATAAAGTTGATATAATAAAACTAAGCTTTCTAACGT # Right flank : TAGTAAAAAAAGCTGGTACGTGATGTACCAGCTTTTTTGTTTTTTCTCCTCTTGATTGCTTTGTTATCTCAAAAGATTGACCAAATAAATGTATCGCTATGCCCAAATTTGCTCCACTGTTTTAAAGTAGCTTACAAACTCTTGCAACTCATTCATCATGTATTAATATTCTTCTTGGTAAAATGTTACATAATCGCCTTCAGAAGTGGGTCCTGTTTCAACAGAAATAACCAGTTTCTTCCCAAATACCTTTGCAAGGTTGACCTCATTGTGGAAAATTGAGATTATATACTCAGCTCTGTTGCTGTAAGCCATGATGTTTACCTGGTCTGCAACCAAAAATACTTACTTATATGAGCTTTTACTTCCCCTTTGGATACCACAAATACTCAACAGATGACCTTTTCACAACAGGCTGAGGATATAGGCTCATGAGCTGCTGAATTTCTTTGTCTATATCACACCTTACCTTTAATCCAAGCTCTTTTGCCTTTTCATAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 34801-34307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34800 30 100.0 36 .............................. TGGAAGAGTTCATATATGGAGTGATAAATAAAATCT 34734 30 100.0 36 .............................. GTCGGAAAACTATAAATCACACTACCAGTACCATCC 34668 30 100.0 36 .............................. CTATCATCTTCTTAGACTTCACTAATAGCACCGCCT 34602 30 100.0 37 .............................. CCTTCTGGTTTAACAAGTACGTAGTAATCACCTTCAA 34535 30 100.0 36 .............................. CAGTCCTGTCCTACTCTTTCAGCAATGAGTTTCTGT 34469 30 100.0 35 .............................. CGTCGTCTTCGTCTTCATCTTCATCATCATCTTCA 34404 30 100.0 38 .............................. ACTTTTATATTGACTTCAAAATTGGTATCTTCAGCGGG 34336 30 93.3 0 ...........G................C. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.2 36 GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Left flank : AAAAAATCAAGCTCCTGCTTGCGGTTTATAAACTTTTTCATAAAAATCACCTCATATTTATTATACTCTATTTTATTATACTTTAAAGTATATTTTGTGCATCAGTATGTAGTTTGTTTTAAGTGTCAAAATATCTTGATGTTTTATTTGCTAAAAACATTTTGGTTCTCATCTTTATTGGTGGGCTGTTTATCAACGTTCAAAAAGATTTTATTTTTTATATTTATACACTCAACATTGAAAGAGATTTCATTTTGACTAAAAGTCATGTCTGTCGACCTCCGGTAGCAAAATTTTGAGGCTTGTTTTGTATGCGATTTCAGGCTTGTAGTGTGTAGATTAGATCAAATTGCTGGCAGCGACTGGATAGACGGAAGGGGTTAAAAGGGTTTTATGGCTTGATTTTTCTTTGCTGAGATGACTTATCCACAGATGTTTTGATATAAAAACATTGACATGGATGTATAATGTTGATATAATAAAATCAAACTTTTCAACGT # Right flank : GCTGTGGCTGAGGTTGCAAAATTCCCTGTATCTATAAGTGTCAATAAAATAAAGTGCTCTTCTTAGTTTGTTTGATTGAACACTTTTTTCCGATATGTTAAAATTTATTGTTAGAAGTAGTTTTATTAAAAGGTGAACAAAATGATAATTAGGAAGATAGTAAATGGCTATCAACTTGAAAAGATAGTGGACATTCCAGAAGCAGCAAAAAATATGCCTGTTGAATTGATAGTCAGAATACCCCTAAATAAAAGAAAAAAAAGTAAAAAAGGTGATGAAATTCTAAACGAATTGTCTGGTGTGTTTGGCAAATATAAAAACCCTAATTTAATCCCCAGTGAAGAAGAAGCATGGAAGAATACTGTGAGGGAAATATATGAGAAAGAACAATAAGAAAATTTTAAAACTAATTGATGCCAATGTGATTCTGCGTTTTTTACTAAATGACATTGCTGAGCTTAATCAAATTGCCAAGGAAATTATCAAAAACAATGAAGTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 37353-36883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 37352 30 93.3 37 ............................TT TACTAAGTAATATCAAAATAGACCCACGCACAACGTT 37285 30 100.0 36 .............................. ACGTTCTTTTTGCTTGCTATTATCACCTTCTATTTA 37219 30 100.0 39 .............................. TTTACTTTCTCCTGCCATTTTTGTCTTCGCTTCTCCATA 37150 30 100.0 37 .............................. GCTTGGAAACATTACTTGCCAATGCACCATACATTTA 37083 30 96.7 36 .....................A........ CTACTATTTATCTTCTTGGAACAGCAGAAAAAGGTC 37017 30 96.7 36 ...........G.................. GCAGACTGGACAAGTGTGAATATCCACAATAGTTCC 36951 30 86.7 8 ...........G...G.....A.......A GGAAGGGA G [36923] Deletion [36914] 36912 30 76.7 0 .C......A..G.T....AA.A........ | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 93.8 33 GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Left flank : GATTTTTCAATTTGAAATTTTAATCTACAAAATTTTTTAGTAAAAGTAATTTTTACATACTTGTTTTGTTATGAGCTTTACAAGTTTTAATTTTTTCAAAGGCAACTCTTGTTTAAATCCATACTCACATATAATCTCAAAAGCTTAACTTTACGATAATCACAAAATTCTTCTAATTTGTATTCTCTATTTCCATCCTCTGTTGCAATATTATTCACAATATTTTAAAAAATCATGAATACTAATACATTTTGACCAAAAGTCATATCCGTCGACCCCAGGTGTAAAATTTTTAGAGATTGATTTGAACACGGTTTCATCCTTGTTGGTTGTGGGTTTATCTTGACTACTGGCAGCAGCTGGATAGACGAAAGACTTTGATTTGGTTTTAAGACTTGATATTGTTGGCTTTGAGTTTGTTTTTAAGGTATGTTCTAAAATAAAAACATTGACACTGGTGCATAAAGTTGATATAATTAAATCAAGCATTCCAACAAGTT # Right flank : AATCTTTAAAATGCCAAACAAAAGAATTTAACCTTAGGCTTCAGCAAGGACTGCAGCAAGGAATTCGTGAAAGTCAAATTAAAATAAAATAGCTAAGAAGATGATACAAAAAGGTGCAAAAGAGATGGGAAGAATAGCTGAACTGACTGAACTTGATATTGAGGAGATAAAGAAAAATTGAGGAAAGAGCTTTTGAATTGAGGATAAAAATTCTACGCCACAATGCCGATTTTAAGGAAACTTAATTAAAAACAAGTTCTTTGCCTCTTCTGCATATTCCAAAAGTCTTTCTGAAAAACCTGCTCTGCTAAAGAGGACATAAAACTCTTTTTGGTCTGGAAATACTTTTACATTTTCTGCTTTTTTCTTTAAGTCAAAAAAGACATCAATATCAGCCATGTTTTGCGAATATTTGCACTCCCCAAAAACAACATGCCTCATGCTTCTCCCAATGCCTACTATATCAATCTCTGATTTTCCATCCCACCACTTGCCTATTT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 47248-46256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 47247 30 100.0 37 .............................. TTTAAATAAGGAATTTTCCCCCATTGTGATAAATCTG 47180 30 100.0 36 .............................. GATTCAAGAAGGCTACTTAGGACTTTTAAAAGCTAT 47114 30 100.0 38 .............................. TGTTTAGTCATTGAGTATCTCCTCCTTCGCATGTTTTT 47046 30 100.0 35 .............................. GTCTTTAACCAACCCAAGTTGTATGGTGTAGTTGT 46981 30 100.0 33 .............................. CATTTAAAACTGCCTCCTTTTTCATGTTAGCGG 46918 30 100.0 36 .............................. ACATGATTAGTGACGTTGCAACGCCACCCATCAAAG 46852 30 100.0 36 .............................. ATTCTTTTAATGTCAATAATGTGATTCTCAATCTTT 46786 30 100.0 36 .............................. TTTCTTTGCTGCTGCCTGTCCAAAATCACTCTCTGG 46720 30 100.0 35 .............................. TCAAGACGTGCCAGGGTAAGAGGTCTGCCTCTTGT 46655 30 100.0 35 .............................. TTCTTCTTTTCTTGCCCTCAGCCGCCCCGCCCACG 46590 30 100.0 35 .............................. TATTTAGTACATAACCAATACTTACCATTCAACAA 46525 30 96.7 36 ...........G.................. CTACAAACATAAAAAGAAGAAGACAAATATTGATTT 46459 30 96.7 36 ...........G.................. GGTTGCACCAATGTTCCAACCCTGTACTCTAATTCG 46393 30 93.3 37 .....C.....G.................. ACTTTCAGCACAATCGAATAGTCGTTTAAATCTTCAT 46326 30 86.7 10 ...........G.............T..GG AAGAGTTGGG Deletion [46287] 46286 30 76.7 0 .C......T....AA...AA.....T.... | A [46271] ========== ====== ====== ====== ============================== ====================================== ================== 16 30 96.9 34 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : GCAGAATAGAGACAGCTGAGAGGATGATTTTAAAAGGTTACAAAGATGAGGAGATAGCAGAGATTACAGGGCTTTCGCTTGAGAGAATAAAAGAACTTCGTGTAAAGCATAGAAATTGATTGAAATTTTGAAAAATATCCTTTTGCCACAAGCGTTTTTGATGCTGCTTGTGGCTTTTATTGTTTTAGCAAGCAGCAGAATAGAGATTTCAACTTTTGAGTTATTATTCGAAAGACAATTTATATTATTTCATTTTGACCAAAAGTCACATCTGTCGACCTCAGGTAGTAAAATTCTAAAGGTTGATTTGTATGCGGTTTCAAAAAGATTTGGCATGGTTTTTGCAAAACTTCTGGCAGTAGCTGGATAGACGGAAGGCTTTGAGGTGGTTATATAGTCTGATTTTTCTGGCTTGATGTGAGTTTTTCACAGATGTTTTGATATAAAAACATTGACATGGGTGTATAATCTTGATATAATAAAATTAAGTCTTTTAACGT # Right flank : AGAAAAAGTGAGGACTTTAAAGCAAAAAAGCCACAAAGAGCAAAAGGCTCTCTGTGGCTGATTTTTAATTTTTCCAAATTTTTTAAACTTGATTTTTTGTTTGAGATAGTAATTTGAGTGCCTCTTCAACAAGCTCCTCAAACTCTTTGATTATTTTCCCACTCCCTATCCTGTCTTTAGTAAAGCCAAAATGCATCACTGAGTTTCTTTTTGCCTTTATCCTCTCAATAAAACCTGCAATTTCTATCGGAATACTTTTAGCCATCTCATGTATTTTTTCATTCTCTTTTGTCTCAGCTTCATATATATTCTTTGTCTCTATTTGTTCATTTTTCTGCTTACTCTTTTTGGTTGCTGCAGCAGAAACAAGTTTTCTAACATCTGAATCATTCTCATCAACTCCTAAAACCCTGCAAAGATAGGTTATCATAGTTTCCTCTAACGCAACATATCCTTCAGCTATAAGGGAATACTCTTTGCACCACTTGATAACTTCTTCC # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 5 49500-48673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 49499 30 100.0 35 .............................. TACTCTCACTTGGTCTTTGGTATTTAAGCTAATAT 49434 30 100.0 38 .............................. TTGCAATGCATATCTCGCAATTTCTGACAATGTCATTC 49366 30 100.0 37 .............................. ACCATTTCCCATACTGTCATAAAATCCCCTCCTTACT 49299 30 100.0 39 .............................. GCATTTTTTGTAGCCTCATTATACATGTCAAGTTTGCTG 49230 30 100.0 35 .............................. TGGCCTTTCACCAAGCAGTAGGTCAGCCCAGAGTG 49165 30 100.0 36 .............................. ACTGCATAACCAAAGTCAAGCCCTCTTCGAATCCTA 49099 30 100.0 36 .............................. ATTCTTCTTTCTTGCGTATATATCTTGCCAGCAAAG 49033 30 100.0 37 .............................. GTCTTTCCTTAATTGAACTGTTACCGTTCCACCTAAT 48966 30 100.0 36 .............................. TACAAAATTACTCGGAATTAAATCCCTACTATTTTG 48900 30 100.0 36 .............................. GGATTTTTTAATTTCATAATGTATTCTTCTATCATT 48834 30 100.0 36 .............................. ATAACTTTTGCATCTTCAAAAACAAAAGCAGTTTCA 48768 30 96.7 36 ...........T.................. ACAAGATTTGTACCAGCTGTCCAAGTCGCAGCATAT 48702 30 90.0 0 ...........T...............TG. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.0 36 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : ATAACGTCATATACAAGCAGGCACATTTTTATTTCATTCCCTTTTGAAAGGCATGGCTTGACAGACAAGAATAATTTTAATAACTGTCTTTAAAAATTTTGAGGTCAAAAAATTTACGAAGTTTGTAGAAAAGATAGAATTAAAATTATTTTGCTCGTTGTGAGGAACAATAAATTTGGTAAGAAAGGAGCTTATATGGAAGTTACAAGCAATAGATGAGAATATATGCGGCAAATGTGCATAAAACCAACATTTTGACCAAAAGTCATATCCGTCGACCTTAGGTAGTAAAATTTTAAGGGTTAATTTGTATGCGTTTTCATTCAGATTTGATGTGGCTTTTTAAAAGCTTTTGGCAGTAGCTGGATAGACGGAAGGCTTTGAGGTGGTTATATAGTCTGATTTTTCTGGGCTGATTTAAGTTTTCCACAGATGTTTTGATATAAAAACATTGACATGGGTGTATAATCTTGATATAATAAAATCAAGCTTTTTTACGT # Right flank : AGAAGAAGAGGATAAGAAAATATGTTTGATATTTTCCTTCCCATCTGCTATAATGTTTTCAGAAGAACTCCTCAGGTGAAAACAATGAATAATAACCAGCTCCCTCATAACATAAACGACCTTGAGTACAAATACATATTCTCTAACAAAAGCATTTTCCTCAGGCTTCTGAAAAGGCTTGATGAGATTGGAATATTCAAAAATCTTACAGAAGACCAGCTTGAAAGAATTGACAAAAGCTATGTGCTACCTGATTTTTCTCAAGAAGAAAGTGATTTGCTTTATAAAGTAAGCTTAAAAGAAAAAGAAATTATCTTTTACATTTTGTTTGAACACCAGTCTTCAGTTGACCATTCAATGCCCTTGAGGCTTTTGTTTTACATCACAGATATATACAGAGACTATATCAAGGATTTTGACAGAGGGGAAATAAAGAAAAAGGGATTTACATTACCGGCAGTTGTGCCGATAGTATTTTACGACGGGGAAGACAGGTGGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 6 62185-62380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================== ================== 62185 26 85.2 13 ....-.T......A..........C.. CCCTTTCATATCG Deletion [62224] 62224 27 85.2 38 ....T....G....A...........G ATGGGCTGGTTTAGTAAAGAGGGTAGCTGCCATAGTTT 62289 27 100.0 38 ........................... AAGCTGTTGCAGAACCTACTGCCACATATAACGTATTT 62354 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ====================================== ================== 4 27 92.6 30 CAATCCCCAAAGGGGAGGCTACAAACA # Left flank : GTTTTTCTTTAGGCGAAATCAATATCTCAAAGCGTTAATTCTCTTATATGAATCAATAATTTTATTGTTCGCTGACGTGCATGGGATAAAAGATGTGATGAATTATGATTCGCGAGAAGAAAGTAGAAAAAAGATTAAGGCAGAGATTTACAATTCCGAAATTGATCCTGAGAAGAATTGACTTATAAAAGATAAGGATGAAGCAGGAATTTACCGAACTTTAGAGTATGTTCGAAATGCAGCAGCACATGGTTCAGAGCCACGAACTAACCAAAATTACCTGCTAAATTCAAAAGCATTCAATGATTTGTTTAATTCAGCATCTGAACTCTTTGAGAAGATGTTGAAGCGAAAAGATGAGCTGAAAAGATAGATACAAAAATGAATTGATTTATCCGAAAAAAGCTTGAGGTAAAGTAAAAGCCACAAACAACTTTTAAAACAAAGTTGTCTGTGGCTTTTTTAATTTCCAAAGAGCAGACTGCTAATGCCCGTTCACT # Right flank : ACGTAGATGGCTTGGGGAATCTTACAAGGAACAAATGGTTAAGTTTTCAAGCTGCAGTAGGTTATTTCTATTATACCCCACAAACTCTTGAAAGTCAACACATACCAGAATTTACCTTTTGCTGTCGACCCCCGGGGGTTTTTGGGGGGATTGCAGGTCGACAGCAATTGGTAAATACAAAAGCCAAATTATGCCTTATATATCAAAGTACATACAACTATATGGAATAAAATGAAAATACAAAAATACAATATACAGGAATAGATGCAATAATATTTCATTTCGCTCCTTTTTAATTTGAAACACATGCATCCTACAGATTTGGATAAGGATAAAAAAGAGAAAATTGCTGAAGAATAATGAATCCAAGCTCCAAAGAGGAATTAAATTTAGCATAAGATGGCGTAAACTTCAGAAAAATCAAAAACACAATAGAAATCTAACTGTAACCGTGTTATAATATTTATTGACTTCAAAGTTATTAACTTTAAAGTTAGTAA # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-0.74, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATCCCCAAAGGGGAGGCTACAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 7 79838-80001 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 79838 32 100.0 33 ................................ AGGGTTTGAGTTATCAGGGTTTGAGTTGCTTCT 79903 32 100.0 35 ................................ TTTTATCACTTCGCTTTTTTGATGAAAGCCATCAA 79970 32 93.8 0 ..............................AG | ========== ====== ====== ====== ================================ =================================== ================== 3 32 97.9 34 GTTTCGATCCCCAAAGGGGAGGCTACAAACTC # Left flank : TGAATTACCACCGTTTGACCTGTTTATTTTCTTTGCCAATGAATATGGAGCAACAGCTTATATGGTTATTTATGGTATTGATATAGTCGATGCTCATCAGACGTTAATGATAACCAATGTACTCACTGAGAATGTATGGACATTTATGACAAGGGAGATAGAAGAAGTTAAAGCTGGAACAAAAGCAAGTGGATTTGGTAGTCCAAGTTTCAATCTCCAAAGGGGAGGCTACAAACCATCCATGACATCTTTAAAATCAAAATTGATATCCTCAACAAACTTCACTATCACATAACCTCCCTGAAACTATTTTCTTTTGATCCAATCTATCAATTCTTTAATACCAGATATTAACCCACCTATCATACCAGCTATAAAAGCACCAGCAAAAATGATTAATACAGCTAATAATGGATTCAAATTAATCACCTACTTCCCTCATTATTGTATATATTCTGATTAATATTTAAATCTACCATGTTAAGATTTAGTCTGTTACG # Right flank : GTTTGAAAAGCTTGATTTTATTATATCGACTTTGTGCACCTCTGTCAATGTTTTTATTTTAATACATTCCCTCAAAATCAACACAAACTAAGGTGCATCAAAGAAAAGAAGCCTTTTAACCCTTTCCGTCTATCCAGCTGCTGCCAGCAAACCATTAAAACCTATGTCCCACATACATGAAACCGAATACAAATCAGCTTTTAAAAATTTTGCACCGGAGGTCGACGGAAGTGACTTTTGGTCAAAATTAATATATAGTCGTAAAATTAACGTATTATGTGCATAATCATAAAATAAGCACACGTTGTTTTTCAGCAGGAAGAAATATATTTAAATTACACCTGTTGAAGATATTTAGATGTTATATTGTTAACAATAATAACTAATTATAACTATATTTAAGTTGTTGAATAAATAATTATACCATTAATGTTATTATATAGGATTACAAATTATTCCACGTGTATTTAAAAGAAAATTTACAGTTTTCAATTTTTTGA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGATCCCCAAAGGGGAGGCTACAAACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 90572-90274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 90571 31 96.8 37 ............G.................. GGTATTCCAGCTGTTGAATACATTCCACCCCATGTCT 90503 31 100.0 35 ............................... ATTTATACGACACTATGGCATAAACATAATAAACA 90437 31 100.0 36 ............................... GCCTCTTGTTGTCCTGATATCGGGAATGACATACAG 90370 31 100.0 35 ............................... CTTGTTCACCTATATCAAGAAGTTTGAAAAGCCTA 90304 31 96.8 0 ........................G...... | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 98.7 36 TGTTTGTAGCCTACCCTTTGGGGATTGAAAC # Left flank : AGAATAGAAACAGCTGAGAGGATGATTTTAAAAGGTTACAAAGATGAGGAGATAGCAGAGATTACAGGACTTTCGCTTGAGAGAATAAAAGAACTTCGTGCAAAGCATAGAAATTGATTGAAATTTTGAAAAATATCCTTTTGCCACAAGCGTTTTTGGTGCTGCTTGTGGCTTTTATTGTTTTAGCAAGCAGCAGTAGAATAGAGATTTCACTTTTTGAGTTATTATTCAAAAGACAATTTATATTATTTCATTTTGACCAAAAGTCATATCTGTCGACCTCCGGTAGAAAAATTTTGAGGTTTGATTTGTATGCGGTTTCAATGCTGAGGCATGTAGGATTGCTTGATGTTCTGGTACCAGCTGGATAGACGGAAGGGTTTGAGGTGGCTATATAGCTTGATTTTTCTGACTTGATGTGAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGGGGTGTATAATGTTGATATAATAAAATCAAGCTATTTGACG # Right flank : GCAGATCTTTTACTTCTCATCTTGGATAAGAAAATATGTTTGATATTATCCTTTTCATTTGTTATAATGTTTCTTAGAAAACTCTTCAGGTGAAAATAATGAATAACCTGCTTCCTCACAACATAAATGACCTGGAGTACAAATACATATTCTCTAACAAAAGCATCTTCCTCAGGTTTTTAAAAAGACTTGATGAGATTGGGGTATTCAAAAATCTTACAGAAGACCAGCTTGAAAGAATTGACAAAAGTTATGTTTTGCCAGACTTCTCTGAACAGGAAAGTGACATCCTCTATAAAGTCAATTTAAAAGAGAAAGAGATTATCTTTTACATTTTGTTTGAACATCAATCAACAGTTGACCATTCAATGTCAATAAGGCTTTTGTTTTACATCACAGATATATACAGAGACTATGTCAAAGATTTTGACAAAGGGGAAATAAGGAAAAAGGGATTTACATTGCCGGCAGTTGTGCCGATAGTGTTTTACGACGGGGAA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTGTAGCCTACCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 9 92549-92120 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 92548 30 100.0 39 .............................. GTTTTTCTTTTAGATTGCAATGTCTCTTCCGGTATGAAG 92479 30 100.0 34 .............................. CAGCTGACAAAAACATAGCAAAGGATTACAAAGA 92415 30 100.0 38 .............................. CGCTTTGAATTCTCACGCAGTACATAGAAAAGCAACCA 92347 30 100.0 36 .............................. CAGCGATACGTTGTTGCTGTGTTCTCCCTGCACCAG 92281 30 100.0 36 .............................. ACAAAATGAAGCTTTTTGTCTTCATCAACATACCAA 92215 30 100.0 36 .............................. GAGAAAAGCTCATCCAATGAAGCTATACCATTCATG 92149 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 99.5 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : CATCTAAACAAAATTATAAACCAATTTTTCCTTTTTTTAAACGCTTCTCGCTCTTCTTTTTGACAAAATTCGCAAAAAAATTAAATTCTGCTTTTGCACAATATAGTTATAATTAGTTATTCTTGTAAACAATATGACTCCTAAATATCATCTACAGGGGTGATTGAGATGAATTTCTTTTTGCCGAAATACAACTTTCTGCTTATTTTATGATTATGCATATAATACATTAATTTTACGATTATATATTCATTTTGACCAAAAGTCACTTCCGTCGACCTCCGGTGCAAAATTTTTGAGTTTTGATTTGGATACGGTTTAATTTCGATATAGCAAGGCTTTGGCTTGATTTCTGGCAACAGCTGGATAGACGAAAGGGATTGATGAGGGTTTAGCTCTTGAATCTTCTGATTTGAGCAGCACTTTGATATAATGTACTGATATAAAAACATTGACACCTTTGCATAAAGTTGATATAATGAAATCAAGCATTTGAACGT # Right flank : AGAAATGGAACTTGTTAACTGATCTTTAAGAATTGGAACAATCTCAAAATGCCAAACAAAAGCATAAATGTTTGTGGTATAATTAAATTGGGTAAAAAACAAAAGAAAATCAAAATCTTTGTGTGCAGGCTGGAGAATTTCACCCAAAAAGCTTTAAAAGCGGAGTGAAGAAGTTTTGAACAGTGAACTTCCATCGATGGAACATGACACTACCTTTAAATTCCTACTCAAAGACAAAAAAGAGCTGTTACTTCTTGTCAAAGATATACTCAAGTACAAATGGGCAGAGGAGATAGAAGAAGAATCTATAGAATTTGATGACAGCGAATTTGTAACACAGCACTTTTCGCAGCTGCGAGCCGACATTGTAGCTAAAGCAAAACTGAAAAACAGAGAAATGTATTTTTACATCTTAATTGAGAACCAATCAACAGTAAGAAGAGATATGGCCCAAAAGATACTAAAGTACATGGTAAGCCTGTGGTGGAATGAACTTAGCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 10 2617020-2616458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 2617019 29 100.0 38 ............................. TATTTTTGAATGTAATTATACACTTCAATTTCCCCCAT 2616952 29 100.0 36 ............................. CAACTGAACTATACGGAATAATTTTAGACCTGTATC 2616887 29 100.0 38 ............................. GCTAAATGCTAAAATGTCAGAAAGAAATAGCTAAACGT 2616820 29 100.0 41 ............................. TTATCAATAAAAATTGAATGACATTAAAATGTTATCAAGTG 2616750 29 100.0 36 ............................. GCTTCATTTGCTGCCGGTAAAACCATTCGCTTGGTC 2616685 29 100.0 37 ............................. GTAAGCATAGATATAAGCATATGCTTGCAGGCTTTTT 2616619 29 96.6 37 .......................A..... CAGACAGGACAGGTGGCTAACTCTCTCTTTTGTTCAG 2616553 29 96.6 39 ................A............ GATTGATACTATTTCTAGAGCTTTCGTTGTTTTTATACA 2616485 28 72.4 0 ..C.......G......-.A...A.T.TT | ========== ====== ====== ====== ============================= ========================================= ================== 9 29 96.2 38 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TAAAGCTGTAGCACTTGGATATAGAGTTTTGTTTACCACAGCAAATGAGATGTTAGAAGAGTTGTATATTTCAAGAGCGGATAATTCGTATCAACAAAAGCTAAAAAACTATGTTAATGTGGATTTGTTAATAATAGATGAGCTGGGCTTAAGGAAATTTAATCAAAGCAGTGTAGATGATTTTTATGAGATAATATCAAAGAGATATGAGAGAGGATCGATAATAATAACCACAAACAAAGTATTTGAAGAGTGGCCGAGGATATTTTATGATCCAGTTTTAGCGACAGCGATTTTAGATAGATTTGTACATCACTGTCATTTTGTGGTTATCAAAGGTGAAAGTTATAGGATGAAGCAAAGGGAGGGTGCTATCAAAGCTTTAACAGATGATTCCAAGAATGAGTCAAATTAGTTAAATAATGATAATTAAATTTTTTTTAAAACAGGTGGGGAAAAAATATTATCAAAAGTGGGGAAAAGGTATTGACAATAACATA # Right flank : TGAAACAAATCAAATTTTCTCAGGCGTCTTCTTCTATTACGTTTCTTCTTCTCAGTTAGTATTTCAGTAATCTTTTTTATCACGTAATACAACTTTAAAAATTTTTTATTTTGAGCTTGGATAGTTTTAGTCATATTCTTTGTCCTCCTTTAAAAATTTTATTTTAAAAAAGAAGGATTTTTACAGTTAATGTCGAAATATAATAAACAATACAGTTTAACACAAGAATTTGTTAAAAAAGGAGAGATTGTTTGAGATGAGAGCAAAATTTATATTTGAAGTACATAATGGGTTTAACGAAACCAAGGAACTCCCAGTTTACTATAGAACGCTATTTATGGCTTTTTTGAAAAAAGCGCTATCATCATATAATGAGGAATATTTCAAAAGGCTTTATTGGTGGGAGGATAAAAAGAATAAATGGCAAAAGCCGTTTGTTTATGCGGTAAATTTGCCCAACATGAATTTTTCAGACGATAAAGTGCTGTTCAGAGGAGATA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 11 2619537-2622083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034791.1 Caldicellulosiruptor changbaiensis strain CBS-Z chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2619537 29 100.0 38 ............................. AGGGATTAAAAACCGAGTAGTTCAGTAGGAATTAATTC 2619604 29 100.0 38 ............................. TTGCTATGTGATGTAACTCCTAAACCTTCTCTTGCAGT 2619671 29 100.0 38 ............................. ACGACGGACGATAGACCAGGCTTTTCTTGAAATGATTA 2619738 29 100.0 36 ............................. GCAGCAAAAAGCAAAGCTTGAACAACCATTTGCTTT 2619803 29 100.0 37 ............................. GTGTTAGAAAAAATTCGAGAGGCAAACGCAAGGTTAC 2619869 29 100.0 38 ............................. AGTCGCAGCTCATTTATGAACGAATACATACCAAACAC 2619936 29 100.0 36 ............................. ATGTTCGTGTATATGCCTTGTGCAAGCATATCCATC 2620001 29 100.0 36 ............................. AAAGCTTTGGGGAGGGAATAGAAATGAGAACAATGA 2620066 29 100.0 37 ............................. CTTGACTTTGGCTATGCTGTTGACCCTGCAGCCTATG 2620132 29 100.0 37 ............................. TATCAAAGCCGCTTCGTTTGTTACAGACACAATTAAA 2620198 29 100.0 38 ............................. ACCGCAAAATCCCTCCCAGTTGCCATATCGCAAAGCTT 2620265 29 100.0 37 ............................. AAGTATGGCGACGTTTAGACAGATTTATATTTCGTAT 2620331 29 100.0 36 ............................. CTAATAAAAGCTTTTTAAATGAGGTGTAATAGAGAA 2620396 29 100.0 36 ............................. ATCGTATCAGCTATTATAAGAAACACAAAACAGCAA 2620461 29 100.0 36 ............................. TTCGGGGCTGCGGCGCAAGGTTGCAGCGTTCCCAGC 2620526 29 100.0 38 ............................. TGAGGATGAGCGGAATTCAATTCCGGTCACCGATTCTT 2620593 29 100.0 37 ............................. CAGCGCACAGCAACCCAGCTGGCGTGGGCGGGGCGGC 2620659 29 100.0 36 ............................. GCGATAGTATGTAGCAGTTTCAATTTCAAGTTCATC 2620724 29 100.0 39 ............................. AAGAAACTGGGTTAAGGCGTTTTAAAGAAACACTTTTTT 2620792 29 100.0 39 ............................. TATCACTACTAAAATTTCGCTTTTTAAAGTTTTGAAAGG 2620860 29 100.0 37 ............................. CAGCCAAATTTATCGCAAATGCAGATTTGCCCATCGC 2620926 29 100.0 36 ............................. AAAACAATTTAAAACAGGTTGCAAAACTATTCTATC 2620991 29 100.0 38 ............................. CTATTTAGTTCTGCCACGTTGCTTATCTTAGCCAAAGT 2621058 29 100.0 39 ............................. AGACTCATTAACACGTTTAGCAATAATTTATGAAAAACA 2621126 29 100.0 37 ............................. ACAGCTTTTGGAGAAAAACCCAAAGTTACAGATATTC 2621192 29 100.0 38 ............................. TTAAAAAGTAGATAAGCCCCTACAACACCTAAAACAAC 2621259 29 100.0 38 ............................. AAGGAGGGATTAGTGATGATATTTGTTATAACTAAAGA 2621326 29 100.0 36 ............................. GCAACAGCAAATTAACGAGCTGTTAACAAAAGATTA 2621391 29 100.0 37 ............................. TAGCTCGTTTTTTTAACGTAACAGTTGACTATTTAAT 2621457 29 100.0 38 ............................. TTCCTCAAATTCTCAAGCAATCTTGCAGACCAAATCTG 2621524 29 100.0 39 ............................. AGCAGGCAAATTCAAGATGGCAGAAGAAGTAAGGAAGTC 2621592 29 100.0 38 ............................. TAGCTAAACAATGCTAATATTGTTAAACCACCAGCGTA 2621659 29 100.0 37 ............................. GAGTAAATGCACAGGACATGTTGCAATTAACGTCTGC 2621725 29 100.0 38 ............................. AAAAAATCAATAGTCCACAAATTGTGAACAAATTGTTA 2621792 29 100.0 36 ............................. AACTGTAGATAGAAAATTTTTAACCAAGCAAGCGTT 2621857 29 100.0 37 ............................. GCAGATAGTCGCTGATGTAGGGAAAAAGATTGATATA 2621923 29 100.0 37 ............................. TTTCATCCCAAATTTGAGAGTTGTATCTGTTTTTCTT 2621989 29 100.0 37 ............................. TTTAAAAAATTTGATGAAGCTTTGCAAAGACTTAAAA 2622055 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 100.0 37 GTTTACATCCCTCATAGTTCAGATAAAAC # Left flank : ATGTACACCTTTGAATTTGCTATCTTTTGTTTTAACTTTTGGACATATCTTCTTACATTAGAATAGCTTCCTTCAAAATCAAATTCCGCTTGCAAGTCTTGATGTATCTTCTTTGCTGAGTGTCCTTTATTAACCTTTGCCTCAATAAACTCCCTGTAATTATCTAATACAGAACCTTTTGATTTCCTCTCGACTTCTCCCTTCTGTTCAATGTCATGGATTACTTTTCTAACAGTTTTTCTATCCACGTCTAACAATCTTGCTATTTGACTTTTGTTGTATCCCCGTTTGAAAAGTGTGTAGATTGTTGTATGCATTGCAACCCCCAACATTTTCTTGTTATCTTCTCCTTCTGTAGTTTTTCCATACTTTCCATTCTACACTACAGAAGGCTTCTTTTTAAGTGGCAGGTGGGGAATTTTTAGTGTCATTTCTGATGATTTTATTTTATCATTAACAACTATTCCTGCGATAGGGTGCCAAATGTAAAGCCTATTATT # Right flank : CCCTCTTTTTAAAAGTTGGCGGAAGAAATTGATGTTGCTTTCATTATAGTTTATTTCATAAGTCTCTTCAAGAGGGGTATTTTGCAGCAAGGTGGGAGTTAAGGTTTTAGGATATTTTGAAAAATAGGCTCTATCCCTTGAGAGAAAAGTCTTTTTTAGGCTGAGCTTAAATTTATAGGTTTGCTGCAAAAAGGATAAAACTGGTTATGAAGCCTTTTAAACCTTTGACCATCCCTCACAATGCAAGCAGCTTATTTTTCCTTCAACACTCCATTCTAAAATTTCTTAATTTATTTAGGTTGTTGAATAAAAAATATTACCAACAATACATAAAATAAACAAAAGTTATTGATTCCATTCATAAGCGAAAGAAAACTTCTTACCTTCTAACTTTCTAAGAAGTTGCTCAAATAGAAAAGTAATTAGTATCCAATCAATATACCTTTTATAATTTCTAAATCCCTTGAGCCTCACATTCTCAAGATTATATTCACCTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCTCATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //