Array 1 598-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBMQ01000136.1 Weizmannia coagulans strain NL01 contig_000138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 597 30 100.0 36 .............................. CTCGTGGTCATCATCAATCACAAGTGGAAACTCATT 531 30 100.0 36 .............................. AAAGCAGAAAACCGGAACTGCACGATCAGATTAAAA 465 30 100.0 37 .............................. TCAGTTTGCTGATTTTCAACATTCTTGGTTGTTCCGC 398 30 100.0 36 .............................. CTGCCAAAAAGGAAATCGAAATGTACTATGATGGAC 332 30 100.0 37 .............................. TCTTGGACAGTGCGACCGCTTCAATGACTGTTTTGGA 265 30 100.0 37 .............................. TTCTAAAATATCGACATTATCTAACAAAAAATTCTTC 198 30 100.0 37 .............................. TTCCTAAAACGGAACGGAAGAAAGCGAGGTGAGATAA 131 30 100.0 37 .............................. TGCATGTGGGCACACAGGACGTGTACAAATATATGGC 64 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 37 GTTAGTATTTTACCTATAAGGAATTGAAAC # Left flank : G # Right flank : CTTCGACGGCTTGCGCAGGCGGCCGACGTCTATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 31072-31343 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBMQ01000018.1 Weizmannia coagulans strain NL01 contig_000018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================= ================== 31072 33 90.9 44 .........T.C..T.................. GTTGAACCCGTCTCCGTCCAAATCATCTCGGGCATAGTGGCAGC 31149 33 100.0 43 ................................. TTACAACCCACCTCCACTTGAATCAACTGGTCATAGCGGCGGA 31225 33 100.0 45 ................................. TTACAATCCGCCTCCACCTCTGAATCATCTCGCCATAGTGTCGAT 31303 33 87.9 0 ..C........C..........C.....C.... | GGAGACTG [31326] ========== ====== ====== ====== ================================= ============================================= ================== 4 33 94.7 44 CCATTGGAAACTGGCACAAGAATCGAAATGGGG # Left flank : CGATCATCTTCCCGAACTGGATGAAGTACGTCTATAAAGAAAATATCCCGCGTTTCAAACGGTTTGCCGTTGAGGTATGGGGCGTGGATCCTGCAGGGAAAACGGATGAGGAAATTGCACTTGCCGGCATCGATGCAGTTCGCGCTTTCTTTAACGAAATCGGCGCGCCAAGCCGGCTTGCAGATTACAATATCGGCGATGACAAGCTCGACGTCATGGCGGAAAAAGCTTTGCCATTCGGCCCGATCGGCAACTTTAAAAAACTGGGCAAAGAAGATGTGCGGGAAATTTTGAAGATGAGTTTGTAAAAAGAAAAGGATGTCCTTTATGAGGACATCCTTTTCTTATTGGCGGAAGCCTGCGACATGACGGGATTAAAACCTGCCTCCGCTTCCGAATCATCTGTCCATAGCGGGCCGTTGGAAATCGGCCAAGAATGGAGACTGCGAAACGGGGATTGAAAACCGCCTCTGTTCCAATCATCTGGCCATAGTGTCGAT # Right flank : GTTACAACCCGCCTCCACTTGAATCAACTGGTCATAGTGGCGGACCGTTGGAAACCGGCCAAGAAAGGAACCTAAGAAATGGGGTTACAACCCGCCTCCACTTCTGAGTCATCTCGCCGTAGCTGTGGCCGGGTGACTAGCCTAAGCAAAGGAGCCCCGTCAGGAAGCAGTTTTCCCAACGGGTCGCAGTTACTCCAGCACCTCTTTATATACTTTATTTTCCCGCATCAAAACCGGGTATAAAACCAGGCCGATGACAAACAGCCCGATGCCGAGGAAGAACGTTTTTAAATCGGCAGTGCCGGTAATGATGACCCATACCGAATACACTAGCGCAATACCGGTAATGATACCGTCTGTTGTGCGAGCGCCTAGCGACGTATAAGTTTCACCGGCTGCCACCAGCTTCAACTGGTAAATAACCGATACAAGATACGGGATCAAATAAGCCAGTGTTGCCACGACAATGGCAAAATCGTACGCTTCCGAAATGGTGTCCG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATTGGAAACTGGCACAAGAATCGAAATGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 38695-38466 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBMQ01000027.1 Weizmannia coagulans strain NL01 contig_000027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 38694 31 100.0 34 ............................... CGGATCCCGCGTGACGTTTTTTAACTTGATTTCA 38629 31 100.0 35 ............................... TGCCTGGGACACGAACATTTAAACAGGCCCCGGTT 38563 31 100.0 37 ............................... AGGCATTCTCAAGGGCTCCATGCTAATGGAAACGTCT 38495 30 87.1 0 ...A...C.................-...T. | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 96.8 36 GTTTGTATTTTACCTATGAGGAATTGAAACA # Left flank : CGATCGTCCCGTTTTTTCGCAACGGAGAAAAAAATACGCGCAACAGCATATATGCCAAGCCATTACAACGCATTACGGACAGACTCATTTTTGAAAAAAACACATGGCTGGTATCAGAAATGGAGCGGCTTGTGCGTAAATATTATAAGGAAATGTTTCGGGAACACACATATGAAACTGCTGAACAGGCAATCCGGGAAGCGTATGAGGGAAACTGGACTCAATTGTCAAAATATCAACCATTTGGCCAATATGATTTAAAACTGCCATTGCATGTACCGTGGGAGAATTTCAAGGTTTGTCAGATGTGAGCTGTTGGAAGTGTCGTCGGTCCTCATTAGCGTAAAAACCCCCAGAGACCGATGATAAACTTTTCTTGGAGAGAAGGCGATGCTGTCTGTTGGTCCATGCAACTTTAAACTTATCGCCTGAAATTTTTATCACGAGCAGGAGGTCTTCCCATCAATGGAGAAATGTTATTATATCCCACATTTTTTGGA # Right flank : ACATTAAACATAGCGAGTCAAAAGCTAACCCCTATCTATTAAACTAAGTTATTTTTCAGTCTATCACGCAGAGTCAAATTTAATATCCAGGAAAGTTTTCCTTTTAATTCTGTAATCAATAACACGCAAATCCATGCAAAACAAATTTTGCAATCATAAAACGAGAAAAATCATCTGAAAAATCGTAAACTATTACTCGAAGGGAGATGGAGCTATGGAAGACTACTTGATGTACTTGAATGGTGAGTGGACGGGGGAAGGACTGCCAAAAATTAAAGTGGACAACCCTGCGTCCGGCGAAGTGATTGCGACGATTCCAAAAGGCGGAGAAAAGGAAGCCAGGCTTGCTGTGGATGCGGCGCATGCGGCTTTTCCGGCGTGGGCGGCGCTTTCTGCCTATGAACGAAGTGCTTACCTCCGCACGTGGTTTGAACTGATCCGCGAAAATGAAAATGAGCTTGCCAGGACGATGACCATTGAACAGGGCAAGCCGCTAAAGG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATTTTACCTATGAGGAATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 109133-111668 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBMQ01000004.1 Weizmannia coagulans strain NL01 contig_000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 109133 32 100.0 34 ................................ GCAAAATCTTAACCAACAATTTGTAATGTCGGAA 109199 32 100.0 34 ................................ GAGTCCATCTCGGGCGCAATGAGCCGATTGGGCG 109265 32 100.0 33 ................................ CAGCGTATATATCAAGTCTTTGTTATCGTTTTG 109330 32 100.0 34 ................................ TTTTTGCCATCAAGTCAAAAGCGACATCTTTCGG 109396 32 100.0 36 ................................ AATTTGCTACCGAACTTAATCTTGGCACTGCAAGTT 109464 32 100.0 34 ................................ CCCAATAAATTGCTTCATTATCGATTTCTTGCGG 109530 32 100.0 33 ................................ TTCTTGAAACTATCTTGTAGTAAAAATACCGGT 109595 32 100.0 34 ................................ AAAAAAGCATTGGTAGCTTTTCCAATGAAACGCA 109661 32 100.0 34 ................................ TAAGAAACAGGGGACCACAATTCACGCCAATCGA 109727 32 100.0 33 ................................ AGCCGCCATTATTGCGATGTTTAAGGGTGATTG 109792 32 100.0 35 ................................ AATCCACGCATTTTTTTAAAAGGATGCGGTACCTT 109859 32 100.0 33 ................................ CTCCTTATTTTACGCGGATTTTTTTTCCTACAT 109924 32 100.0 34 ................................ AATATTGGTTTTGATTGCTTCAGATGACGATTTG 109990 32 100.0 33 ................................ ATCTTTTCGCACCTCGTGTAAGGCACGTTTTCG 110055 32 100.0 34 ................................ GGAAAAATAACGCGTATAAAAAATGGGACTTAGG 110121 32 100.0 34 ................................ AAACACACGCGCTATCTTCGCCGTGGCTACCGCA 110187 32 100.0 34 ................................ CGCGCATTTATCGACCAGTTAAATGAGTTTGTAC 110253 32 100.0 35 ................................ CTCGCACACATGACCGTTAATAAGCACCTTATCGC 110320 32 100.0 34 ................................ TCCGGAATGAAAGCTACGAGGAAACGGAAGATTA 110386 32 100.0 34 ................................ AAACCTGGCACTCGCACATGAATCTAGCTTGAAG 110452 32 100.0 33 ................................ ACGACGTAATCAAGAAGTACGAAAAGAAACTTG 110517 32 100.0 33 ................................ CAAAGACAAAAAATGGAAAACCGATTATTAAAG 110582 32 100.0 34 ................................ TTAGCTTTCAATTCTTTGTACAATTTCCAAGCAA 110648 32 100.0 33 ................................ CGCCAACATATACTAATGCTTTTCATTCGTCCA 110713 32 100.0 34 ................................ CATACATGCCCATTTTTCGCGTAAAATACCCCCC 110779 32 100.0 33 ................................ GGAAAACATCGCATGCCCCCAGTCAGAAATGGG 110844 32 100.0 33 ................................ ACACCCGGGAAATATTCTTCCACAAGCTTTACT 110909 32 100.0 35 ................................ ATGCGCAAAATAAAAGGGTTTGGCTTGTCGCCCAC 110976 32 100.0 34 ................................ GATCCGGTCAATAAAGGCATTTACCCTTGCCATC 111042 32 100.0 34 ................................ ATAAACAACGGGATAACTATCCAAATTGTCCCAG 111108 32 100.0 34 ................................ TTTTAAAGATTCACAAATCACAATTTTTGAAGGC 111174 32 100.0 33 ................................ CTTTAGATGTGGACATTTCCCTTGGATGGGGGG 111239 32 100.0 34 ................................ AATGAGGTTTAATTATGGACTTAAAAACAATTAA 111305 32 100.0 35 ................................ TGCAAAATGGTCGAATTTGTTAAGTTGAGCGTTGA 111372 32 100.0 33 ................................ CTTTTTTTGGTATGTACAAAAAGGGGCACAAAG 111437 32 100.0 34 ................................ CATGGAGCATAGCGGATTCGAACCGCCGACCTCT 111503 32 100.0 34 ................................ AAGCAGCGTATAAAATTTGTCACCTTTCCGCGTC 111569 32 100.0 36 ................................ CGTACATATAAATAATCTCCACCATGATTTGCATCG 111637 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 39 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : AGATGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAAATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCAGGGCAGAAGAGGTTAAGAAAAGTAGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTCCAGAATTCCGTTTTTGAGTGTTTCGTTGATGCAACACAATTTGCCTCTTTGAAGATTGAACTGTCTAATATTATTGACCCAGATGAAGATAGCCTGAGATTTTATCAGTTGGGAAACAACTATAAAAATAAAGTAATGCATATCGGGGCAAAACCATCTTTGGATTTAGAAGACCCCTTGATCTTTTAGTGCGAAGGTGTAGTGCACACGATTTTCCCGTGTGTTCGCACCAATATGCTAACCAATATTTTACATATATTGGTTAAATGTGGAAAAATAGTCCTTTGTTTATCAGAGGAAATGGCGAAATTTGGTTGTTTTAAAAACGTACATTCGCCTTTTTGACCAAATTCCGCT # Right flank : TCGTTTGCTGTATTTGCGATCCCTAGGATCATCAAGTCGCTCCCTAATGAATACTTGCTGAGCAAACCAGACAAAGCCTTGTATCTGGTTCGCTCAGCCGCAAATCTGGTTGATGCCGCCTTCTTTGTTCCTTCCATCAACCTTAGACCCGAAAAGTGGCGCTGAACGCGCAGATACCAGTGACAAACCCTTTTTGTAAAGTAACTCTTGTTTTTATAGTTCCTGGAACCGGGACCAGGGCTTTCCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCGTCGTCCAGTTCCCTGATCAAATTCCAAGTCTGATAAATCCGGTTTGCCATTTTCTCAGGATCTTTCAGCATCATTTGGTATAAATCCGGCTCATGGCTCAACGTTTCAAGCAGTTTCTTTTCCGGATTACTGACCGCTTCATTTGTCTTCAGGCCGGCATGGTTGGTAAGGCCCAAAAGATAATCAATTGAAACTTTTAACACTTGCGAAATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1888-1178 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBMQ01000062.1 Weizmannia coagulans strain NL01 contig_000062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================================== ================== 1887 25 100.0 41 ......................... TAGGGAAGGGGAAACGACAAGGGCGTCTTCGCGGACGTTAA 1821 25 100.0 41 ......................... GTGATATTGCGGCTGGTGGTACATATACGGGTGCGAGTTAA 1755 25 100.0 44 ......................... CTTGGTTAACATTGGCGGAAGTTCATTTTTTCGGACCACGTTAA 1686 25 100.0 41 ......................... ATTTCTCGCATTTTTCTACCTCATTTCCAGTCGTATGTTAA 1620 25 100.0 42 ......................... CATTTCCCCTTTCCTTATCTTGATTTCATTATACCATGTTAA 1553 25 92.0 42 ...............A....A.... CGGTAAAGCTGGATGAAAAAGAGCGAGCAGTTTACCGGTTAG 1486 25 100.0 42 ......................... GAAGATGTTGAAAATGAGCAACGAATCAAACGTGTCAGTTAG 1419 25 100.0 41 ......................... TGCTATCGCTCTAACATCAGGCTCTGCCTGATCTATGTTAG 1353 25 100.0 42 ......................... TCCCAATAAACTTCTAAAGCAATGGTTTTACCCATGTGTTAG 1286 25 96.0 59 .........C............... TCTGTATTGTGCCAGCTGATCCCGTTCTCGCCGCCCGTTACAACCTACGCCAGTGTTAG 1202 25 96.0 0 ........T................ | ========== ====== ====== ====== ========================= =========================================================== ================== 11 25 98.5 44 TATTTTACCTATAAGGAATTGAAAC # Left flank : TGGGTGTTTTTTGGGGAAATTTTTTTATCTGGGAGGAATTGGAACAATAGAAAGAATATAACTCTATATTACGAAAGTAAAAAAGAAGCTTTAAACGAAGAGTTGCCCTGATCCTAGGTATAATTGGGATTGAACATCTATGAGCTTGCTGAGTAAGAAAAAATCCTAGAGTGGGAAAGGGTGCGGTAACTTAAAATGTAAGGGCTTTGTGAAAATACAGGAAAAATTGTGCGCTCCTTAGCTGATTCAATGTAAAAGAAGGCAGCATTTTTGTAGATGCACTCTTCTATTCAATTCGTACATCAAGCCCTAAGAATGTCGTCGACCTCCAATAGCGTAGAAAATCTAGGGGATCGACGACAAATTGTTAAAAACGGCTAAACCTTTGACACTATTAGTATGCCTGACTTCTATTGGATGTTGAATAGATTTTTTTGCGCAAGCAGGAAAATCCAACAGTCGTAGAGAAATGTTATAATACCAGTGAATTTATGGGTTAA # Right flank : AGTGCCAGCTGCGCTAGTTCTACGTTAATTTCCGCTATATAAGATGAACTTAAGTTTTCGACAGCTCTAATCTAACAAGCAGCCGATCAATAATTTTCTGACTTTTTTGGCTAGCTTGTTTCATAAATTCAGCCACGTGGGACCGGATAAAACTTGCTGAAAAAAAATATTATTAACGACGTCTTGCTTCAGGGCATTCCATAATCCTTCCACTGGGTTCAGCTCAGGGCTGTATTTAGGGAGATAAACAAATTTCAGCCGTGTATTTTCTTTCAGAAAATCCTTGATGACTTGTGATTTGTGCACTTTACTATTATCCAGGACCATTTCAATTTTACCTTGTGGGTATTCGCTTAAAAGGAGTTCCAAAAAACGTTTAAAGGCCGAAGAGTTGCTTTTTTCTTCTTCATAATGCGTGACTTCGCCGGTTTCATAGTTTATTGCGGCGAACAATTTAGCACCTTTATGTTGTTGGCCATATGTCATAATCTTTCGCTGCT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 732-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBMQ01000078.1 Weizmannia coagulans strain NL01 contig_000078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 731 30 100.0 37 .............................. CGAGATAAAAATTTACAAAATATCCGATGCACACACC 664 30 100.0 38 .............................. CCTCGTGAAATGGCATTTCCTTTTCTTCCGGCGGTATT 596 30 100.0 37 .............................. GAGGTAAAGCCCTGCCAGTGTAGCCGGAGCGGATGCC 529 30 100.0 37 .............................. GAAAGTAGACGCACATTAGTTCTATTTTTCCCTGATA 462 30 100.0 36 .............................. ATGCTTTCATAAGAAAACAAGTTAAATCCAGCAATG 396 30 100.0 36 .............................. TGCGATTGGAAGCAAGGCATGACTCATTAATTATTC 330 30 100.0 36 .............................. AGTGCAACAAGATAGGCAATAATACCACCTAAAAAG 264 30 100.0 36 .............................. TGGAGAATCGCTGTTCCCTGCATATGACTGCGACCA 198 30 100.0 35 .............................. ACAGTATTCAGTTCATAAATCTTTCCACATTCTTC 133 30 100.0 38 .............................. ATCCCAAAAAGAGGCTTTTCTCCATGCAAGGGACGGGT 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 37 GTTAGTATTTTACCTATAAGGAATTGAAAC # Left flank : TCGTCTGAGTGGACCTAGGTTGGGACGTCCATCCAAAACGGAAGACAAAACCTTGAAACATGTGGCAAAGCAGGTGCCTCTGAACGTAATGCCGTTGAAGGCAGATTTGTCGAAGGTAAGCGCAAGTATGGGCTAGTCCTTATTCGAGCACGCCTTCAGGAGACCAGTGAAACAGTAGTAGCCCTTCAATTCCTTATAATGAATCTGGAGCGGAAGCTCAGGGTTCTTTTTTGAAATTTTCACAACACTATTTTATATTTTAATAACCGTAATTTGGCTTGTATCTGACAGAATCTGATTCGTTCAGCAAGCCCTAAAAATGTCGTCGACCTCCATTAGCGTAGACAACCTGGGGGATCGACGACAAATTGTTAAAAACGGGTAAACCTTTGACACTATTGGTATGCCTGGATTCTATTGGATGTTGAAGAGATTTTTTTGCGCAAGCAGGAAAATCCAACAGTCATGGAGAAATGTTATAATACCAGTGAATTTATGGG # Right flank : CCGGGCCGATCCAAACTCTACAAACGGTTGGATCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 3332-1835 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBMQ01000079.1 Weizmannia coagulans strain NL01 contig_000079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3331 30 100.0 36 .............................. TCGATACACCATTCAATAAATGGAAATTTATACCAT 3265 30 100.0 37 .............................. CGCAGCTGGGCTGTGAGTTTCTTTTCCTTTTCTCTTA 3198 30 100.0 37 .............................. TCCATTTTTTCCGCTTTCTCTTCCATAGCTTGGGTCG 3131 30 100.0 37 .............................. CATCACTAGCCGATTTACGCACTCTATAGATTTCCCC 3064 30 100.0 35 .............................. ATAGCTGGCTGATTTGGGATTGTGTCGCCATATCC 2999 30 100.0 36 .............................. CCATCTGGCATTTCAGTCAAAAAATTAACGCCAAAT 2933 30 100.0 35 .............................. TACACAAAGGACGGAAAAGATGTCATTTGGTCAAC 2868 30 100.0 38 .............................. CCAGCCTGGAAAGTCCATCCATCAGTTGGGCAGCATTT 2800 30 100.0 36 .............................. TATGGATAGAGGATTATCAAAAAACAGTGGTAAGTT 2734 30 100.0 35 .............................. TCCTCAAAGAAAAAATTCACATATTCAGCCATATC 2669 30 100.0 38 .............................. TAATAGGAAGAAAAACGGAAAAATACACGTACAAAAAA 2601 30 100.0 38 .............................. ATTTTTAAACCTACGCTTTCTTGTTTCATCACCTCTTT 2533 30 100.0 36 .............................. TCACGCAGTAAGGGATGGTATAGAGACATCTGATAT 2467 30 100.0 35 .............................. GCAGAAGACGACGATGATGATGACGACTTCTAAAC 2402 30 100.0 38 .............................. TAACCTCCTATGATAAAATTTAACAAACCACGAACCCG 2334 30 100.0 39 .............................. CCGTTTTGCCCGACCGCATAACTCCGGTACCGGCAGGCC 2265 30 96.7 38 .................G............ CAATTCAAAGTCAAACTTTTCCCCGTCAGCAGCTTCAT 2197 30 93.3 37 ..........C......G............ AGAAAGCCATGATGTATCTGCATAACAAGGCAATAAA 2130 30 96.7 38 .................G............ TTTTACGAAACCCGGGACTGCAATTATATGGCCTTGCT 2062 30 96.7 37 .................G............ CAGCCAGTACCCGACAGCCGATGTCATGAACAAGCAG 1995 30 96.7 36 .................G............ ATCTTCCATGATGAATTGTAAGCCCTCGTTTAAAAT 1929 30 96.7 35 .................G............ GTAGCAGCCAAAGTCTTTCCAGTTTTTTTAACCTT 1864 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 98.8 37 GTTAGTATTTTACCTATAAGGAATTGAAAC # Left flank : G # Right flank : CGTGGAGGAGTCCCCCTGATATCCTGTCCGCAGCCACCTTCAATGTCGGTTGTATGACCAGTGGCGGGGCAACTACGCTGATATACCCTTTGTCATTCCAGCATGTGTTTTCCATGGGAGATTTTTAAACCGGTTGAACGAGATTACTACACCCTTTTATATCTGCACTTAAAAAACGAAAGAGCACATGATCATTCTTCTGAAATACAACCAGCACTATTTTCAATACCAGAGGAAGAAGATAAGTCTGCGTCTTCATTATTTCATCCCTCTCCCGCCGGGAGAAAACCGCATCCTTTCATGCCCTTTTTTCGTGCTTTTGAACTGGCCCCTTTACAATATATTGAAGTGATGGTTGAGAGTGTCTATTTACAAGTGAAATCAAACCCGCTATTTGCCGCTATGTGTGGTTTTACCGAGAAAATTCCGAGTTACCGTTCCTTTGCTCGCTTTGATCAAATCATGACAACAAATGATCTTTGGGAAAAAGCCCGGCTATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATAAGGAATTGAAAC # Alternate repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //