Array 1 354893-358233 **** Predicted by CRISPRDetect 2.4 *** >NC_015518.1 Acidianus hospitalis W1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 354893 24 100.0 40 ........................ TTATAGCAATATTCCTCATTGTTTTAACACCTTCTTAGCA 354957 24 100.0 39 ........................ TACTTCTATGAAACTATTGCTACCCCATAGGTCATACTT 355020 24 100.0 41 ........................ TTTGCATAAACACCGCCTGCCAGTATGAGGTTATTAGCCAG 355085 24 100.0 38 ........................ TCCTATAGTGAAATAGTAATTTGCTATTTTACTCAATT 355147 24 100.0 38 ........................ TATATTGGAAGGGGCTTTGTCTTACCCAATCTTTAGAA 355209 24 100.0 40 ........................ TTTGTTCCGCAAGTACGTTTGTCTTGCCTTCTTATATTAC 355273 24 100.0 40 ........................ TTAATTATTGAATTATCGCGGTCAAAATGAACGGTAATAT 355337 24 100.0 41 ........................ TAGAACAATTTCTCATCCTATCGGTTCCCGTTAAAATTTAA 355402 24 100.0 40 ........................ TGGTTTTTTCACTTCTTCAGGAGTAGATAAAAAAATCTCC 355466 24 100.0 43 ........................ TTTGAATTTCTCACCAGCGTCCTTAAGATTCATCGCTCTCATC 355533 24 100.0 40 ........................ TAGACACTATATCCTTTTATTGAAAATATCGTCATTATGT 355597 24 100.0 40 ........................ TCAAAGCACGCAAAGTCACTAATAGACATACCACTACCCA 355661 24 100.0 38 ........................ TTCCCTAAGATTTTTAGCAATAAATTAAGGTATGTTGA 355723 24 100.0 38 ........................ TTCGGTAGCGTCTATAGCAAAGCACATTCCATCAGAAG 355785 24 100.0 39 ........................ TTAACGTATTGGTCAGGGCTAAGAACTTTCCTATATGCA 355848 24 100.0 39 ........................ TAAGTTCGACCCGTACGCGGTATTCGGGAGGACATTTGC 355911 24 100.0 39 ........................ TTTAACAGCATGCTTGTGATAGAATTGTTATGTTTTGCA 355974 24 100.0 40 ........................ TAATAAAATCGGAATAGCAAAACCTATTGCACTCAATTCT 356038 24 100.0 40 ........................ TGGTACTATCTCTACTTGGTCGCATACAGCGTTTATATCT 356102 24 100.0 40 ........................ TTCTAATCTCTTCAAGAAGTTTCATCTTCACGCTTTCTGG 356166 24 100.0 39 ........................ TATGAACTCCCAGACCTTGACCTTAACACGTGCGTAGTC 356229 24 100.0 41 ........................ TAGACAAGAACAATGGCATTGCCAACTTCATATAGGTAAAC 356294 24 100.0 40 ........................ TATGACGGTCTCAGATAACGGCTGTATCGTCACAACAGCA 356358 24 100.0 40 ........................ TATCTTAGCTTCAGCGTTATTTACAACGATTTTTATTTTC 356422 24 100.0 39 ........................ TTAGAAAGCTACGGGATCCCCATGGAGCTAAGAGGAATC 356485 24 100.0 39 ........................ GATAACTCTACAATATTCCATTACACATTGACTTATCAT 356548 24 95.8 39 .......................G TAAAAAAATGTAATATCTATTCAGACCCATTGAAATAGT A [356562] 356612 24 100.0 39 ........................ GATATTGTTGAAAAATAACGGAAAACCTCTTCAGAATAT 356675 24 100.0 41 ........................ GAAAAGGTGATGCGAATGGATCCCCTAAATAAATCTAAATC 356740 24 100.0 40 ........................ GATACGAACTGTTTACAAGGTTAATTAGAGAATACAACAA 356804 24 100.0 42 ........................ GAGATAGGAAACCTTGGTCTTGCTCCATAAAGTTCTGTGTCT 356870 24 100.0 40 ........................ GCTCTCTCAAGATCGGTATATATCTTTTTGACCAAGCAAA 356934 24 100.0 43 ........................ GTTGATGTAATGAAGTCAACGACTTTTTTGGCAACTGAAAATC 357001 24 100.0 39 ........................ GAATACCAATGAGTGAGTGAAATAGAATATATCTCCTCT 357064 24 100.0 39 ........................ GTGAAGGAATTACGTCGGTTTAAGCAAATATACGTGATG 357127 24 100.0 41 ........................ GTTATAACAACCAGTAAAGACATTCTCTATTATTTTTGAAA 357192 24 100.0 40 ........................ GTAAACCTCGACCTCCTGGGTTTAACAGTGCTGTTCTCAA 357256 24 100.0 41 ........................ GAGTTTCCTCATATACGTAATCATATTCCGCCTCTAAGTCC 357321 24 100.0 39 ........................ GTTAATTATAACATCTTCATTCTCTTCCTCATCATACCC 357384 24 100.0 39 ........................ GACTATTACTTTCGTTAAATTCTACTGCAGTAAGCTATC 357447 24 100.0 39 ........................ GGCTTTTTCGATTTGCTTTTTAATCAATTCAACAAAGGT 357510 24 100.0 38 ........................ GTAGAAGCGTGAAGAAAATCGTTGTAATTGATGAGGCT 357572 24 100.0 39 ........................ GGGATTTAATTTATTTGGATATATGACTACTAATATATC 357635 24 100.0 38 ........................ GTGTGAGAAATTGAGTATAAGTTGTACAACGCGATTAA 357697 24 100.0 40 ........................ GGTGTAGTTCTCTGGGTCAGAGCAATATTCGCCAAATTTT 357761 24 100.0 41 ........................ GTTTTCACTATAGAAAAGTACTGGATAGCCTTGAACTTCAT 357826 24 100.0 41 ........................ GACTGTTGTTTAGCCTCTTCCTCCTTCTGAGCCCATTCCTC 357891 24 100.0 40 ........................ GCTATACTTCCGTTTTCATCTTTAATCCTACTTCTAACCC 357955 24 100.0 39 ........................ GATAACTTTACAAGTTCTTCTAAATTCTTTTGAGTCTGC 358018 24 100.0 41 ........................ GTTTATAGCTATTCTGTTAACCTTTATGTTGGTGTTGCACA 358083 24 100.0 39 ........................ GACCTATTTGCGTTAATAGAAAGGAGAAATTCCCGAATT 358146 24 100.0 40 ........................ GTTACAGTAACGTTTATTGTTAATTCGTATTTATTGTCAT 358210 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 53 24 99.9 40 GTTGCATCCCAAAAGGGATTGAAA # Left flank : CTTGTTAAAAATTTTTATCTTACACGTGTATTATCTGTTAAATTTAAAGGAATTTTAATTTTCGGTTTCAGAAAAATATTTTTAATTATACGACGTTATTCCGATAAGGGAAAATACGTAGTTTAAAAATTAGCTTAAAAAGATAGCTACACATGAGAGTAAATAGTATTAAATAAAATACGAAATATTAATGAATAAAATATAACGAACGGAAATGAATTAGAACCGTTTATCGTAGATAGATAAACCTAAGAATTCGAGTTCCATTTATAGTTTAAAAACGATAAAGTTTTAGTCTCAATGCGACCGTTGCGAGAATCAAAAGAAGAATTGAAGCCTTATAAATAATTTCTCTCTTTCAATTAGTGAAAAAGACCATGCGACCGTATTACGAATTCTTAATTACTAGGAAAATTGGTCGCATGATGAACTAAGAGAAGTGATGAAAACTTATTAATGAGGAAAGAGAAAAATAAGGACAGAGGTTAATAAAACAAACA # Right flank : AGAGTAGTAAAGTAATAAATTCGCAAGAAGGAAGTATATGTTATGATATCAGGGACTACAGTGAAGCACTTTGCTTACTGTCCTCAAATAGTCAGGCTTGAGGCCATGGGTTTTACCGAGAGAGTCACTGAGGCAATGCGTGAGGGATTGGAAGTTGATAAAGAGAAGACTATTAATTCTCTTTACGGAGTTCTTAAGCCTTTGAACATCGTCGCTAAGCCTATATTTAGATATAATGATCTTGTAGGCTCTCCAGATTACGTATTATTTTTCAGCAACTACGTAACTCCTCTGGACGTTAAGCAGGGAAAAGAAAGGATTGACCACGTAATGCAGATTCTTTTTTACCTTTATATCATGGAAATGAAGGGATTTAACGTGAAGGAGGGGTTATTATATTACGTCCAACAAGGGAGGTTAAAGAAGGTTAGGTACTCTTTCAGGGAGAGGAATCACGTAACTAGGATTATACAGGAAATAAGGAACGCAATGAAAGGTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 372036-371234 **** Predicted by CRISPRDetect 2.4 *** >NC_015518.1 Acidianus hospitalis W1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 372035 25 100.0 39 ......................... AGACAACTCCCCTAAACTTCTGGAGTATTTGAAAGAAGC 371971 25 100.0 39 ......................... ATCACCGAGGTTCATGAACCTGGACGAACCTAAGTGGGA 371907 25 100.0 39 ......................... TATTTTGAAAGACAAAGCTCATGTTCATCACAAATAGTA 371843 25 100.0 50 ......................... GGCGTGTTTATCTAATGTTAAAAACATCTTGTACATCTTTCGGATAATTC 371768 25 100.0 39 ......................... GGCGTGTTTATCCAATATCTTGTACCATTCACTTCAATT 371704 25 100.0 38 ......................... ACCTGGTTTGGTTCATTATACCAGGCTGGTTTTGAACC 371641 25 100.0 40 ......................... TTATTAAGCGGAAATTCAGCATAAATGATTTCGTATTTTC 371576 25 100.0 39 ......................... TAATTGAAGGCCCAAAAATATGCGCCGCCTCCCTTTCCA 371512 25 100.0 39 ......................... GGTAAAGGCATAAAATGCCCTGTTTTTACAAATGTTCCA 371448 25 100.0 38 ......................... GATCAAACTTGAGAATAATTCGCTATGCGATTTTAAAG 371385 25 100.0 38 ......................... GGCGTTTCTTCACTTTCAAAAAATATTGAAGTAAGTGA 371322 25 100.0 39 ......................... TTTACAAGATACGTTTTCCCCATTTTTTTCACCCTCTCC 371258 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= ================================================== ================== 13 25 99.7 40 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : CATAAAAAGTTTTTATAAAAATCTCCAGGTTAACTTTCAAGATTTAAGAGTTTTTTAAGTAATTTTATTAAAAACGATTTTAAGTTCTGCGTCGTTAATTCAGTGAGGAAAAAATCGAGACTTATAAATTCTTTTATAAAGATATTGGGCTCCTTTTAATGAAAATTAATTATAATATTTCCTCGCACTCTGAATATAGTTTAAGGGATGTAACTATTCTTGAACTGTTTAACGAGAATAACCGGTATAAATAAGTTCGAGTTCCATTTATAGTTTAAAAACGATAAAGTTTTAGTCTCAATGCGACCATTGCGAGAATCAAAAGAAGAATTGAAGCCTTATAAATAATTTCTCTCTTTCAATTAGTGAAAAAGACCATGCGACCGTATTACGAATTCTTAATTACAACGAAAACCGGTCGCATGATGAACTAAGAGAAGTGATGAAAACTTATTAATGAGAAAAGAGAGAAATAAGGACAGAGATTAATAAAACAAACA # Right flank : CTACTCTTTATGGATCTTTGGTAATACTGAATTTAGGTTACTATGTATTTTGATAAACTTAGCCATAAAATTTTAGTAATATCTTATTATAAAATTAATATATTATTTTCGTTATATACATTTAAACAATATAATGTTATAGCTTATTGATAATGCATATTTTGTATCAAAAAGCAATTAAAGAGAGATATAATCGTTAGGTATATTAAAGGATACACAAACTTTCTCTACTAAAGATTGTTAAAACCTTTTACTATGTCGGATCTTAATTATTATTGAGTTTAAAATCCAATTGTGCCTATATAGCGTAGTAATGAACTTTCTTTTTAATGATCCTTCATGATGATTCCTTACGAGGTTAGTAATGTCCCTTCCGATAATTGAAGGTAATTGTGCATAATCTCTAAATAGGATTAAGAATAAGTTACGGTAAACACTAATTTCTTGGTTTAGTTAAAAAGTCTGCAGCATACCCAAGTATATTTAAAGCCCCTACGAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 378318-378863 **** Predicted by CRISPRDetect 2.4 *** >NC_015518.1 Acidianus hospitalis W1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 378318 25 100.0 51 ......................... CCGCTTAATATCACAATTGTTCCCAAATTTTCGACTTCAAATTCATAACTT 378394 25 100.0 38 ......................... CCGCTTAATATCTTAGTATTAACTGAACCTCTGTAACC 378457 25 100.0 38 ......................... GAAATAGACACTGAATAAGTATTGTCTGTTGTCGGTTA 378520 25 100.0 38 ......................... AATATATAGAAGAGTGGTACCAGTCCTAGTAATGTGGC 378583 25 100.0 38 ......................... TGGGATTGGGTTTCACTCACACCCATTCACCCCGATTT 378646 25 100.0 39 ......................... ATTTTTATTGTGACATTAGATAGCGTAATACTGTAATGA 378710 25 100.0 38 ......................... GCAGCTTTTGCAGCAGTAGCTTGGGATAATCGCAGTTT 378773 25 100.0 41 ......................... AATTCAATTTTACCTAACTCTCCTATTTTGACCTCTCTTTT 378839 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =================================================== ================== 9 25 100.0 40 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : AATAAAAAGTGTTCAATAATATTGCGTCTAAATGTAAATTACATAGCTTTATTCTTGATAAAAATTTTAAGAAAACAATTTTTAGTGTTATGTCGTTAATCCAGTGAGGAAAAAGTCGTGGGTTATAAATTCCCTTATAAAGATATTGGCTCCTTTTTATAAAAAGATTTTATTTATTACTCTTTATTTTCTGAATAAATTCTTACGAACGTAACTATTCTAGAATCGTTTATCGACGATAGTTTAACCAAGATGTTCGAGTTTCATTTATAGTTTAAAAACGATAAAGTTTTAGTCTCAATGCGACCGTTGCGAGAATCAAAAGAAGAATTGAAGCCTTATAAATAATTTCTCTCTTTCAATTAGTGAAAAAGACCATGCGACCGTATTACGAATTCTTAATTACTAGGAAAATTGGTCGCATGATGAAATCAGAGGTGTAATGAAAACTTATTAATGAGGAAAGAGAAAAATAAGGACAGAGGTTAATAAAACAAACA # Right flank : GAATTCTGATGGTCTACGATTTTTGTTAAATAATTGCATCACGTGAAGAAATTGAGGAGTATGTTTTCCTAAAACTTATAATTAATCTCTCAATTAGTTATCTTGTGATATTCACTTTTACTTTCGAAGTTAAGCCTGATAGGGACGCTATAATCCCTCCTTTTACTTCAAAACTTAGTAGGTCTATTTTCCTCGACTTTTCTCCCACTTATTCGAAGTTTATAGAAGCGGAAGAACCTTATAAACCCTTTAGGATTACGGTCTTAAAGGACGGGAATACTCCGGTTTACTCCAAGGGAAACGGCATGGTGACTTTGACCGGAGGGAAGATATATAATTTTAGCGTTACAACTACATTACAAAAGGTTGTTGAAGAAGTAGTTAGGACTACTAGTATAGATAAGGAAATATTTAACGCAAAATTTCACGTTGAACTTGTTAATATGGAGATGAAGGAGGAGTTGGGACTGGAGGATTCGAGGCTTTACAAGGTTCTCTTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 4 1562889-1565198 **** Predicted by CRISPRDetect 2.4 *** >NC_015518.1 Acidianus hospitalis W1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1562889 24 100.0 42 ........................ TCGACGACTATCTCATCTTTAAGTACTTGCCTTGCAGTCTTC 1562955 24 100.0 34 ........................ TTCTCTTTTAGCCTTCTATCCCAGGGATTAAGTA 1563013 24 100.0 33 ........................ AATCCAGTCAAACCAGCTAATAGTTTTCCTGAT 1563070 24 100.0 34 ........................ TTCTTCTTACTGAACATGAAGAGACCGTATACCC 1563128 24 100.0 36 ........................ GGATTGTTCTGGATCCATTGACTCTGAAGATTACTA 1563188 24 100.0 36 ........................ AAAAACAAATCCCCAAATAAATCCCCAAAATAATAC 1563248 24 100.0 36 ........................ GTATCCCTACTGGATTTGTCACCACGGTATAATTTC 1563308 24 100.0 34 ........................ TCTTTATCCTCTTTTATCATTTGTATCCCCATAC 1563366 24 100.0 34 ........................ CTTACCTTTATTCCTGCTATTTCCCCTTCTACCT 1563424 24 100.0 35 ........................ CAATAGCTTTCGCCAATTATCAGCCACCGGATCAG 1563483 24 100.0 34 ........................ TTCTCTTAGTATTTTTACATATCTCAACGAAAAA 1563541 24 100.0 34 ........................ AACAAGGACGTATTGAACACCGTCAAGAGGGCAA 1563599 24 100.0 33 ........................ ATCTTGCAACCTTGTTCTGCAGCTTGGCAATAA 1563656 24 100.0 36 ........................ CAAAAGGAAGGTGGAGCATACCTGGGACTACAGTGT 1563716 24 100.0 34 ........................ TATCAATATGCCGTTTTAGAGAATTTCCCATTAC 1563774 24 100.0 34 ........................ TTTTTAAAGTCGTAATTAACGATTATTATCGCGT 1563832 24 100.0 34 ........................ CTACGTTTCCGCCCTACTATCACTACAATATCAT 1563890 24 100.0 35 ........................ TAATGAGTTTATCAGGCTTAGTATGTCATCAACAG 1563949 24 100.0 37 ........................ TCAACTGCTCTCCCTATATAGTAAGAAGCCTCTCTTT 1564010 24 100.0 33 ........................ AGAGAACGTGAGGATAAAGGAAGTCGATGTTGA 1564067 24 100.0 35 ........................ CACTTCTATAGAGCTGTAGCAGACAGCCTTTATAC 1564126 24 100.0 36 ........................ CTAGGCTTTTAGGGCATAAACGGCGTGCTAACTGCT 1564186 24 100.0 35 ........................ AAATCGGGAAAAAGCCCGGGTATTTTTGACGTGTT 1564245 24 100.0 34 ........................ TATATAACGATATAATAACGCTCTAAACTAAGGG 1564303 24 100.0 34 ........................ ATCACACGGAAAGAAAGTCGTAGTTACCACCTTA 1564361 24 100.0 34 ........................ GGAACTCCAGAAAAGAATGAGGATCAGACAGTCC 1564419 24 100.0 34 ........................ GCCCTGTGCTAATACAGGCGCTGCAAGAGTTTGC 1564477 24 100.0 34 ........................ CTATTTGCCAAGTGGATTAAAACGAGTTGGACTA 1564535 24 100.0 34 ........................ AAATATTATTTTAGAGGTGAGAAAAATAGACGAA 1564593 24 100.0 34 ........................ TCTTGAAGGGCGAGGTTTGTCGTTCGTTCAGTCA 1564651 24 100.0 34 ........................ ATTCCAGTCTATCAAGTAGGGGATCCCAAAGACC 1564709 24 100.0 35 ........................ TGAGATATTGGTGTGGGATATGGGTTTAAAGCAAT 1564768 24 100.0 34 ........................ TTTGCCGTCTTTTTCTTTATAGTTGTACACCAGT 1564826 24 100.0 34 ........................ GCTACTGGACTTAAATACGTCGCTTCAATTAAAC 1564884 24 100.0 36 ........................ CTGTTGTAGTTTTCGTGTTAGTATTATCCTTAACTA 1564944 24 100.0 34 ........................ GTAGATTTGGACGTATTACTTAATATCGTGAAGA 1565002 24 100.0 35 ........................ ATATACTGGACTAACCATGGTGCTTACTTCTTAAT 1565061 24 95.8 35 ...................A.... TTCTAATCCATCATTTATTCTAACGCTAATAACTA 1565120 24 95.8 33 ...................A.... GTGCTTGAGTCTATCAAATACCCTTCTCTGGAT 1565177 22 91.7 0 ..................--.... | ========== ====== ====== ====== ======================== ========================================== ================== 40 24 99.6 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : ATTTGTGAGGGGATGAATTTCTCTATCTACTTCTAGTCATTTTCCTAAATTTCTTTCATTCAATTTATCGTGAAGAGTAGGGAAATTAGGAATTGTATCTTATTTAACAATGAATATAGATTATTCCAATTCACTTCTTTTGACCTTTCGTTCTTTCAATTTTATCTTCTTTTCCTTCTCTAGGGTTTCTCTATCTACTTTGTTAATTTATCCCCTTTCAATTCACTCTAAAAACAAGGGTATTTGAAAATATTGTCTGCTTATGAAATTTTTTCGTGTAGATTTTTAGGCAGAGTTTTTGACGTCTTTTTGTGGGGTATAAATACCCTTTATAAACTTTTGTGTTGAAAAGTTACTTTCAAAAATACGGAAGATAACCTTTTTCTACATTGCCTTCCCTTATTTTTAGTGAAAAGTAAGGCTTATTATAAAGGAGTAAATAAGATAATCTACACAACCCCCCTAAAACCATGTGAAAAAATCGTTGAAAAGAACGAGCG # Right flank : GGCTTTTTCAATAGTCTACGCGTGATCTTTTATGGAAATCTTTATAGATGTCTACGAATAATAAACAATTATGTCATCAGTTATTAGCGTTAGGATAAAGAAGGAGATAAAGGAGGAATTAGAAAAGCAAGGAATAGATATTGATCAGGAAGTGAGAAAATTTTTGGAGGAACTTTATATAAAGGTTAAGGCTAAAGAGTACGTAAATAAATGGATTGAGGAATTAAAGGACGTTAAACCTAGTGAAGAAGGTTTCTCTATAAAATCCGTGAGAGAAGATCGTGAGAGTCATTGACTCATCTTCCTTAGTAATTTCTTCTCCAAAGAGAAAGGTTGGGAAAGTGGATGAAATAATAGCTGAAGGAGTTATGACTCTGTATCAAGGAAGTTGCTAATGCTTTGTGGAAAAAGATTCTTATAGGCGAAATGAGGGAGGACGTCGCAATTAAAACGCGAAGCAATGCTGGTCGTAAACCAAGGCGAATACTTGATTGAGGCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 1584303-1583758 **** Predicted by CRISPRDetect 2.4 *** >NC_015518.1 Acidianus hospitalis W1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1584302 24 100.0 41 ........................ CATGAGAAAAAGGGAAAGGGGGTTTAAAAAGCTTTCTCTTG 1584237 24 100.0 39 ........................ AGAAATAACTGCGCCATAAAGAAGAACAAGTATCTCAGC 1584174 24 100.0 42 ........................ AATCCCAACTATCCGTTCACTTTCAGTGTGATACTTACAGAG 1584108 24 100.0 41 ........................ CAATTTGAAACGATTAAAGTAACTCTCTACGCCGAAGACAA 1584043 24 95.8 41 .........G.............. CCACCGTAAGGTGCTGGAGAGACGCCGAAGTAGGAAACGTA 1583978 24 100.0 40 ........................ TAGCCAACTGTGCTAATAATTCTGGTTCCGCTGTATCATA 1583914 24 100.0 44 ........................ GTTGGTACGCTCACAGGCACTAACGCAATTGAGATCGACGGGAA 1583846 24 100.0 41 ........................ AGAGAAAGGCAATGGATTGAAAAATATATCAGCAAAGAATT 1583781 24 87.5 0 .C.................A...A | ========== ====== ====== ====== ======================== ============================================ ================== 9 24 98.1 41 GATAATCTACTATAGAATTGAAAG # Left flank : TCAGACATGGACAAGCCTAGATATCTTCTAGGTTTTATTGGAGGCATATGGTAATTCCAACCCCTTAGTTCCTCCTCTATAGGGTCAGAAGCCCTATAGGAGTGAAGCCTCCTAACTTGTCTAATTATCTGCGACCTCACATTATACATTATGCAAAAAGAATCTAAAATTCATGATAATGATCCTTGTAAATTTTTTTCCCAGTTTTAGTAAGGATAATCGTAATAAATGACGATTTTCCTCTAAATGAAGAATAATAGAAAATATAGGGAAAGTGTTCTCCCGTATACGATCCTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTGGCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCCGGGAAAACCCGGGAATAGTAAAAAAGATAAGAAAGAGTAATATAATACTAATGGAAAGATAGGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGATAAAATAGAGAGTTAAAACCCTCA # Right flank : GAACTAATATAGACTAAATAATTTTTAAATAATATTAAAAGTGACAGTAAATATATATTTATTTTAATGTATATTTAAAGATTTTCCTTACTTCGGAAAAAAGAACATCTATTTTTCGTAATACGTAAATACTTTTATGTAAGCTTATTAATAGATTTTATTTATGAACATTTTGCTTGTTACAATCGGTTTTGACGAGAAGTTTCAAATAAGAGCACTTATGAGGAGATTTAAGGAGATAGATAAGGTTGTTATTGTTGGTTATTTTAATGAAGAGAGGGCTAAAAAGGCTTTAGAGTCCTTTATAAATGTTATAAATACAGCTGGCGTTAGTTATGAATTATTGGAAGTTAACCCTTATTCTTTTGATGATCTAATTGTGAGGATTTCAAAGTTTATAAATAAAAATAAGGGAAATAGGTTAATAGTGAATTTAAGTGGTGGAATGAGGATTTTAATATTAGGCGTTATATTATCCTTTATAATTAATTATGTTGATG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 6 1588353-1588635 **** Predicted by CRISPRDetect 2.4 *** >NC_015518.1 Acidianus hospitalis W1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 1588353 24 100.0 41 ........................ AACCAGTTGGGCAGAAAGTTTAAATACCAGTCCGCGAAGAG 1588418 24 100.0 40 ........................ TATCTGTTACAGTATCCTTGAACTTTTCAAATCTAGTAAT 1588482 24 100.0 41 ........................ AAAGATAAGAAGATTGTAATTAACGTTGCACATGATGAACC 1588547 24 100.0 41 ........................ TTTTTCTTCGTTGACTTTATTCTCCATCTCAGTTTTATTTC 1588612 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 5 24 100.0 41 GATAATCTACTATAGAATTGAAAG # Left flank : GTACTAATTTTGATTTCAATTACTTCTGGGTTAGGATAGCGAAGTCGCAAAGTTTGGATTCTTAAGTTTTCTATAGCGGCCTTAGTTCCTTCTACTATAGGACTAGGAACTACTATAAGCAATTTATCCTCCTTTTGAGCAGAAGTTTCATTAAGAAGTCTTAGAAGATAAGATTCATTAAATCCCAACGTTACAAAGTAAGACTTCATCATTATATATGGTAATATCATAAATAAATAATTTTTGATTACTTTCGAGGAACTTTAATTCCAATTTTTATTCCCTACTATTTCCGTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTGGCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCTGGGAAAACCCGGGAATAGTAAAAAAGATAAGAAAGAGTAATATAATACTAATGGAAAGATAGGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGATAAAATAGAGGGTTAAAAACCTCA # Right flank : GTTTAGGGAGGGGAGGAAGTCAGCTAAGGAGGAAGTAGAGGAGATGAAAAAGTCGCTAGAGGTTAAAGAGAAGGTAGAAGAAATTGAAATTGAGGAAGAGAAATAAAAAGTATTTGAATTAATTTTTATGGTAATACTTGATTAACAGAAATCCCTAACTACTATAGACTAACTGTCCTCAATATTTTATTTCCATAATCTTTTCATACTGTTTTAATACACTAGAAAGTTTTGCACAATTTCTAAAATCAAAAACTCTATCTATCTGAAATTAGCAACATGAGATAAAAGTGCAAAATAATGGAAAAGATATATGAGGCTTCATCATAGAGTGAGGTATAAAAGTTCATAATAAAAGTTCGATCTTTATACTTCATCTTACCATTTACATAATTTCTAATGTATAGACAATAGATTACTTATCTTTTATGTATCCCTATGATGAAAAATTATAATAGTCGGAAAAACTAGATACCATTTATAGATTAAAGAGGTTTTGT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //