Array 1 20728-22677 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQIT01000016.1 Neisseria meningitidis strain M21471 M21471_CHA4080A58_cleaned_ctg_8861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20728 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 20794 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 20860 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 20926 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 20992 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 21058 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 21124 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 21190 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 21256 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 21322 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 21388 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 21454 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 21520 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 21586 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 21652 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 21718 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 21784 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 21850 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 21916 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 21982 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 22048 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 22114 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 22180 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 22246 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 22312 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 22378 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 22444 36 100.0 30 .................................... TGGTCGCCCATAACGGAGACGTAAAGGGCG 22510 36 100.0 30 .................................... TTCTCCTTTTGAAATGTGAATAAGAGTGAT 22576 36 100.0 30 .................................... TACGCATACGCACAACCACAGCGATGCCGA 22642 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //