Array 1 1661314-1660338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023192.1 Bifidobacterium breve strain NRBB08 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1661313 33 100.0 35 ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 1661245 33 100.0 34 ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 1661178 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 1661112 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1661044 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1660978 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 1660911 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1660845 33 100.0 35 ................................. AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 1660777 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA 1660709 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 1660642 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 1660575 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1660507 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1660439 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1660370 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.2 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1671249-1668115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023192.1 Bifidobacterium breve strain NRBB08 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1671248 33 100.0 34 ................................. CCAGAGCGAAGCACGGAAGGGTGCGCCCGCACTG 1671181 33 100.0 35 ................................. ATCACCCCGCCCGCCTCACTGGAATGCATGGAGAA 1671113 33 100.0 34 ................................. CATCGTATCCGGGGAACATCTGGACACCGAGCAT 1671046 33 100.0 35 ................................. CGGAAGAATATCGCTTGACCATCAAGGGCATGTTC 1670978 33 100.0 34 ................................. AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG 1670911 33 100.0 34 ................................. CTCCATTGGGCTGGATGATACATTGCATCATATC 1670844 33 100.0 33 ................................. ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC 1670778 33 100.0 35 ................................. AATTCAGCAACAGTCCCATTAAATCACATTAAAAC 1670710 33 100.0 33 ................................. AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC 1670644 33 100.0 34 ................................. TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT 1670577 33 100.0 33 ................................. AGATTAACGACCGAGGATACGGTCTGCCGATTG 1670511 33 100.0 34 ................................. CACGTGAAACAAATCGCAACCGGGGAACGTAAAC 1670444 33 100.0 33 ................................. CTCGTAACACAGGCCGGCTATCAAGGCCGATTG 1670378 33 100.0 35 ................................. CAGCGCTTCGGGCACGACGGATATTGATATGCCCG 1670310 33 100.0 37 ................................. CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA 1670240 33 100.0 35 ................................. ATAAACAATAATATACCCCACGGCAGTAAGCCGTG 1670172 33 100.0 34 ................................. CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG 1670105 33 100.0 34 ................................. TACAATGCCGTGAACAGCCTCTAAAAGCATTAAG 1670038 33 100.0 35 ................................. ATCATAATTATCACTGTTGCGCGGGGCCTCCATGA 1669970 33 100.0 33 ................................. ATACGACCCTTGCCGCCGCGCACCGTAGCCGCT 1669904 33 100.0 35 ................................. GCGTACTCGACGAACTGGTGGCACATGGCCTCGAA 1669836 33 100.0 35 ................................. GCCAACGCCGGCATGATCGGCAGCGACGCGGGCAG 1669768 33 100.0 33 ................................. TTCCACGAGACCGGCCACATGCTCGACTGGATG 1669702 33 100.0 34 ................................. ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA 1669635 33 100.0 35 ................................. TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC 1669567 33 100.0 34 ................................. ATGGGCGGGCTCGCGGCCGATGCGAGGAACGGGC 1669500 33 100.0 34 ................................. GCATCCTCGAACAGCGCCGCCGCATCACCAACCT 1669433 33 100.0 34 ................................. TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA 1669366 33 100.0 35 ................................. CTCATGCGTGGCCTTGTTGTTGAACCACGCCACAA 1669298 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1669230 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1669161 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 1669094 33 100.0 33 ................................. TGCATCATAATTGCGGCAACCTGACCGGCAGGG 1669028 33 100.0 33 ................................. TAACCGTGGTGACCTCCGTGATCACGGCGATCA 1668962 33 100.0 36 ................................. CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG 1668893 33 100.0 36 ................................. AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC 1668824 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 1668755 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 1668687 33 100.0 35 ................................. CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG 1668619 33 100.0 35 ................................. CTTGTACACGGCGCACATCGCCGCGCAGTCGAACG 1668551 33 100.0 35 ................................. CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA 1668483 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1668417 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1668351 33 100.0 34 ................................. ACGTCCGTGACCGTCACGTTCGCGGCGTCACCAT 1668284 33 100.0 35 ................................. TGGAAGTGGAGTTCCGGCCTTTCCAGGAACGCTGA 1668216 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1668147 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 47 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTATAGCGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCCTGGGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCCCGTCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCACTGTGGATGATCGGCTTCTCTCCGTCCTTGAGCGTGGAGCAGGCGTCGGTGAGCATGCCGTTGGCCAGCTCGGCGTTCGGGCTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //