Array 1 51768-49988 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000002.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 51767 37 100.0 38 ..................................... AAAAAGCTACCTATCACATTACCGTTATACCCACCAAA 51692 37 100.0 40 ..................................... TAAAGAGATGGTTCGTAAAGCCCAACGCAACCAATGGGAA 51615 37 100.0 38 ..................................... GGTAGCTTTACGGCAGAAGATTCAAGAGTGCAAATATC 51540 37 100.0 35 ..................................... TGTTGACGTTTACGATATAGATGCACCAATGAATA 51468 37 100.0 33 ..................................... TTCTTGACACGGGGGAGATGTCTGAAGTATCAA 51398 37 100.0 34 ..................................... TCAAGATGTGAAAGTTCACAAAGACGTAAAAGCA 51327 37 100.0 37 ..................................... TTTAACATTTGCTATTTTTCTCACTAACTCTGATCTA 51253 37 100.0 33 ..................................... AGTATACAAAAATTGTCTGAACAAGATGTATTA 51183 37 100.0 34 ..................................... CTATTTTGACAATAGCGACTTCAGCGTTCATAAT 51112 37 100.0 39 ..................................... TAGCCATAAGACGCAATTTCCAATTTTATCTGGCGCCCA 51036 37 100.0 32 ..................................... ATACTGAGTGATAGCGGCTCTTACTCAGAAGA 50967 37 100.0 35 ..................................... ATTTCCTTCTCTGATATAAATCTTGAAATTAACAC 50895 37 100.0 34 ..................................... CAATAGCTTAACACTTTGGACGATTTTACAACTA 50824 37 100.0 34 ..................................... TTCCTCTAGGAATACTACAAACAACTAACGCAAG 50753 37 100.0 35 ..................................... CTGTATATGGCGTGTTTGACCGTAGATGCGGGGGT 50681 37 100.0 34 ..................................... CTTCCAATGATAAACAAAGCTAGTGATTGGGGAA 50610 37 100.0 35 ..................................... GCGAAGAATCAAAAGCAACAGGATACATATAAGAA 50538 37 100.0 34 ..................................... CATGCGGAGAAACCCAGCCACATTCCCAAATAGA 50467 37 100.0 39 ..................................... GACGTAACTTTGCAGATAGAAATAGGCGACCCTTTACCA 50391 37 100.0 38 ..................................... TTATGGAGGACAAAAGGAAAAAATTTATCGCGTCTTGA 50316 37 100.0 41 ..................................... AACCTCGATTGTGAAGTTTACCTGGTTTTGAAAAACTAGGA 50238 37 100.0 34 ..................................... ACTGTTTGAAAACTGGATTACTGAGCGTTTTATT 50167 37 100.0 35 ..................................... TATTCCTACATGCTCAAGCACGTCAAAGTAAGTTC 50095 37 100.0 34 ..................................... TATTTAAATGGGCTAAAACAACATTTTGGCATCG 50024 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 100.0 36 ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : GGGCGTGCAAACAGGTAAAATATAGACCTTTTGTCATGCTGAGGAACGAATATCATGCTGAGGAACGAATATCATGCTGAGGAACGAATGTCATGCTGAGGAACGGATGTCATGCTGAGGAACGAATGTCATGCTGAGGAACGAAGCATCTTAAAGATTGGCGCCTGTTTAAAAGTAAAGTTTTAACTCGTTTTCAGTACATATATAATTATTGATAGGGATGTGGTTCTACCATATCCCTATCTACGTATTCTGACTCTTCAACTTGGTATCATGCGCGGATGGGTAGGTGTGCAAAAAGAGATTAAAAAAAAAATGGCTGTATCCCAGTTCCCACAAGCATTTGGAGAATCGACAGACAAAAACCATCCGCGCACCTTACACAGAGCGGCTTTCAGCGATTTTGACTCTATACAAACACAATTTTTCATGCTACAATTGACCCATCCGCGCAACCGAACCATGAAAACTACATATATCAAGGCTTTCAGGCGCCCGCC # Right flank : TGAAAAATTTATCAAGTTAATTTGATTAATACAAATGTTACAATATAGCAACATTGAATTGACTAATTATTATGAATAAATCAATCCCTGAAGAGTACGGAAATCTTCTGTTAGAAATTAAACAGCGTATTCGCTCTGCTCAGTATGAAGCATTGAAGGCTGTAAATAAAGAACTTATCGCCCTTTACTGGGATATTGGTAAGATGATTGTTGGGCGCCAGCAGGGTAATAGCTGGGGTAAATCAGTTGTTGAACAGTTAGCGAAGGAGTTACAAACTGAGTTTCCTGGTATTAGTGGATTTTCTGCTCGTAATATTTGGAATATGCGTATTTTTTATGTAACATACTATCAGAATGAAAAACTGCAACCAATGGTTGCAGAAATTAGTTGGACTCATAATATAGTCATTTTAGAAAAGTGTAAAGATGATTTAGAACGAGAATTTTATATTAGAATGACTAAAAAATTTGGATGGACAAAAAATGTTTTAATTCACCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 68822-66482 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000002.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 68821 37 100.0 36 ..................................... TTATTTACAGATATTGACGGAACACTCACAGGTACG 68748 37 100.0 41 ..................................... AACAACGCAATAAAGCTTTGAGAATCATTGACACCCTCAAT 68670 37 100.0 34 ..................................... CTGCTATCTCTTTAACTTGCTTGTAATACTCAGC 68599 37 100.0 38 ..................................... CTCTCTACATTGATGAGAGAAACACATTCTCAATCAAA 68524 37 100.0 37 ..................................... TACTTTTCAAGAGGAATTAAAAACCGAAGCTGACAAA 68450 37 100.0 35 ..................................... TTATGCTGATGGCTCCAATTTCTTTGATTCATTCA 68378 37 100.0 34 ..................................... CTGAGCTAGGCAAAAGCATCCTTAAAAATACCGA 68307 37 100.0 33 ..................................... GCTCAACTAGATCAAGCGCAAGTAACGACAGCA 68237 37 100.0 34 ..................................... ATCTGCAAAACCCGTGCCGCCATTCGCTTGAGGC 68166 37 100.0 33 ..................................... TTTAACAGGACGCTTACGGATAAACTTATTAGA 68096 37 100.0 34 ..................................... GTATTTGCAAATGCCTAAAGCACCATTCGATTAA 68025 37 100.0 33 ..................................... ATCTATGGTACAGAGGTATGTATAGATGTCGGT 67955 37 100.0 42 ..................................... CTCGGTGATTCGATAGGAACACTTTGTAAGCATCTCTCTAAA 67876 37 100.0 35 ..................................... ATTACAAATGTCAATACCAAATACTTAATAAACGA 67804 37 100.0 33 ..................................... ATCGTCCTTCGATGCCTAAATTAATTAACCATG 67734 37 100.0 35 ..................................... TTTGAAGTCGATAGCGGCGACGCAACGCTTAAAAT 67662 37 100.0 34 ..................................... TTTCTGAGATATCTTTTTTATCTTTAGTATCTTC 67591 37 100.0 34 ..................................... TAATTAACTTATCCATAGACATAAGCCCTAAGCG 67520 37 100.0 33 ..................................... ATGCTCCCGCCAATTTTCGACCCAATCTGAAAC 67450 37 100.0 35 ..................................... TAATGACTCCATATTTAAGCTTTGTATTGACAAAA 67378 37 100.0 34 ..................................... CTTTTCCTTGACGTTTGCAGAGTTGATTAAACGT 67307 37 100.0 35 ..................................... GATTATAGTAGGGCTAGCTTTAATATCTAGTGCGG 67235 37 100.0 35 ..................................... CCCATATTTCCTCTAATCCGGTACGAGTGAGAATA 67163 37 100.0 34 ..................................... AAATGTTTCTACCTTAACCGTGCCTTCATTATAG 67092 37 100.0 35 ..................................... GAGCCATTTGATGGCGTAACCAGAAAAAAAATAAC 67020 37 100.0 35 ..................................... CCGAAAGTTGAAAATAGCTCTAATGTTGAGGTCGC 66948 37 100.0 34 ..................................... CGTGAACCAGGAACACTGCTGCATTCCTCTCGGT 66877 37 100.0 36 ..................................... TTTAGTACATGCATCTCCAAGCTGTAAAAACTTTTC 66804 37 100.0 34 ..................................... GTATTTCTATATATTACTACATTTTAGTTTTAGA 66733 37 100.0 34 ..................................... CTTTAGTTAGCCGCCCATCTCCACAGCCAATATC 66662 37 100.0 37 ..................................... AGAGAGAGATTCTTTAAAATCTTTATAAGTCTTATTA 66588 37 100.0 33 ..................................... TTCAGGCAATCGCCAACATGGACACCTCCAGCT 66518 37 97.3 0 ..................................G.. | ========== ====== ====== ====== ===================================== ========================================== ================== 33 37 99.9 35 ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Left flank : TTAAGAGGGCGGGCAAGGATGCCCACCCCACAAGAAAATTTTAGCTTATCAACAAAAATCATCTAGCATATATATATAGTCAAAACAATTCAAAACTGTCATTCTGAACGTAAAAACTGTCATTCTGAACGTAGTGAAGAATCTCCAAGATAATCAGCTTAACGAAATGTAGCTCAATATGACAGAAATCTATATTTTACCTGTTCGCAGTAGAAGCCATTAGTACATAAATATTATAAAACCCTACGTATTTTTGGTCTTAAACTTGGTATCATGCGCGGATGGGTAGGTGTGGAAAAAGAGACTTTGACGAAAATGGCTGTATCCAAGTCCCCACAAGCATTTGCGGACTCGTTAGATAAAAACCATCCGCGCACCTTACCCAGAGAGGCTTTCAGCGATTTTGACCTTGCACAACCACCATTTCTCATGCTACAATTGACCCATCCGCGCAACCGAACCATGAAAACTAAATATATCAAGGCTTTCAGGCGCCCGCT # Right flank : TTCAGAAAATATACGGTAACAAAAATGAGATTTTTTTAGTCTTCTTGAAGAGGACTTTTGCTATTAGCATAGGGGTTTGCAACACGCATAGCGGCTAAGAACGCAGCGAATCATTTACAATTACTGAGTATTATTAACTTAGAGAGAATCCTTGGTACAAGATATAAATATAGGAGGTATCAGAAAAAATTAAATTTTTGGATTTGGAACGGGCAAGGATGCCCATTTCACTTTTATAGAGAATTTAAGCTTTGAACTTCTTGGACTGTTAATGAAAGAATTTGTGCAACTTGTTCGATGCTCATTCCTGTTTGTAGGAGCTGAGATGCTGCGTTTAATCTTGCCTCTCGTTCAGCATCTGCACGTTGCTGTTCAGCATCTGCGCGTTGTTGTTCGGCATCTGCGCGTTGTTGTTCACGTTGGTATAATTCGTCGAGTTCTACGGGAGTTACGAACTTGCGACCGTCTGGACGGTAAATTTCTAGTGTTGTTGGCGCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATTTCTCTTACTCCCTAATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 28102-28520 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000006.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================= ================== 28102 36 100.0 36 .................................... CTCTCTTCGTTATGCCGAATTGCATGACAAGGCTCT 28174 36 100.0 38 .................................... AACTTTATTAGCAACATCTTTCGGATTGCGGTCAGATA 28248 36 100.0 201 .................................... TTGTTAGCACGATGATTATTAGCCGTTTGTTGGGTTACGCAAAGCCTCCACCCAACCTACAAATTTTCTTAACCGAGCAGTATTGTATACTCAAAACGGCTTAAAACTATACTTTTTATGCAAACGTAAACCTTTAAGATGCTTCGTTCCTCAGCATGACAAAGTTCATTTTTTACCCGTTTGCAGTATATCAGTTCCGAG 28485 36 83.3 0 T.......T..C....G.....A............G | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================= ================== 4 36 95.8 92 GTTCTTACCACTACTTCTCCGTGAGGAGATTGAAAC # Left flank : ACCCTCCCAATGCTGATGATTTCAAATATCTGGCTTATTCCAAACCTTAGTCCTAGGTTGGTGTAGAAGAACGTAAACGTTTCTCAAGCAGCCTACGCATTCTCACTAGACCGCGACTTCGTTATTTATTATCCTGAGAATGGGAACGGCGCCGTGTGTTAAATTTATTTCTAAGAAGTCTTATTAAATAAACACATTTTGCTTCGGGCGCCATTTTTAATAAATCATAAGCCCGTAGCGATACATCTTCCATTACTGTGTTTTTTCCTAAGTACGATATACTTTTAAGTAGCTTATATTTTGGCGGCTCGAAGCGGGAGCTAAAACCTAGGGGGTTCTGCCAAAATGCTCAGAACCTAGACAACATAATATTTACAGCAATTCAGTATTTATAATAAGTGAGAAATTGTTTCAATACTGGCGCCTGAAATGGCATCTTTTTTTAGTCCTGCCAAAACCTACTCTCAGAAGCTTATTCTACGGTGGTTACAGGCGCCGGG # Right flank : GATTACGAACGTAGCTTCAATCTTTAGTAATTACACGAACAATTTATGATTAGCGCTCCTGTATCTTTATACCTTTATACTCATTATTTATTGCTACTTTGTACTTACGCTAACAATATTATTAGCGTGTGCTGAAAGCAGATATCAACGTGGTTCTGTTCCAAAAAAAGGCGCCAATGTTAGAAAAGCAGGTATCAATGGGTATTCTAATATTAGAATGCAAAGATTACTTCACTTTTAAGCGTGCAAGCGCATAAAAATGACGTAAGAAATTGTCAAAAAATCCCCTCTAACCCCGTGAATTCGGGAAAAAAAGAGCATTTTAGTCTCATTATTAAGGGGAAAAAAAGATAATTCTTAGCCCCCCTTATTAAGGGGGGTTGGGGGGATTATAACTTTTAAATAAAACTGTGCTTAACTCTCAAAACAATTCCCAAAACAACCATCCTCTACCACCTGGATACTCCATTCGTCTTGCAACAGACGAAGATATTCGCAAG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTACCACTACTTCTCCGTGAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1680551-1681243 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000008.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1680551 37 100.0 38 ..................................... ATTTAGGTGAATTAGTAGCTTGTGATGTTGTATGTACG 1680626 37 100.0 37 ..................................... ACCAAGTAGCTTGGTATCTTCCAAGTCATGTAATAAG 1680700 37 100.0 37 ..................................... ATTCAATTAAATGATGATAACGCTTACACAGTATACA 1680774 37 100.0 35 ..................................... CAAAATGATTAAGACTACACCTGAGACATTCTAAA 1680846 37 100.0 35 ..................................... ATCGAAAGACTCTGGTATCGATTTAAAAAATCTAG 1680918 37 97.3 35 .............C....................... GTATCGTTTCGTCGCGTCGCACAATTTGTAGAAAC 1680990 37 100.0 35 ..................................... TAGAAAATGACGAATCTAAACTAGAAGATTCGTAT 1681062 37 100.0 35 ..................................... GAATGAGCTAGGGATTGAGTATGAGATAGAAAATC 1681134 37 100.0 36 ..................................... AGGGAAAATATTAGAAAAAAAGGCGAAATAATCAAA 1681207 37 91.9 0 ..................T...T.T............ | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.9 36 CTTGATATTATTATTAATCCCTATCAGGGATTGAAAC # Left flank : AGTCAAAGGAGACCCATTACCTGGAAGAATTGGTATATTTGTTGAGGAAATAAAACCTGCTGTAGAGTCTGTAAGGCAAAAAACAGGTGACTTAGAAAAGAATTCGATTATTGCCAATATTCAATACCAAGTCAAAAAATTACCCGAAACTTCAACAATATTAGGTAACTTAGTCAAGGAAGGCAAACTAAAAATTGTTGGTGGTGTCTACGACCTAGCTAGCGGAAAAGTTACATTAGTAACCTGATTTTAGGCGCCTGTGCATGAAATGCACAGGCTAAAATATGTCATGATGAGAAACAAAGCATCTCCAAAACTGTCATGCTGAGGAACGAAGCATCTTTCTTGCAGATTGTTACGCTTAGAAAAAAGTCAAGTTACAACCTGCATCTAGCATATTTAACCATGAGTATTTAAACCTACGTATATAGTCCTCAGTCTATGTATCCACCGCGAAAGGGTAGGTGTAGAAAAATAGGATTTGGTCAAAATCTCTGTAA # Right flank : CCCAAACTCATCTAGTAGCCATTGTCTTGGGTAGTACCTTTAACTGGAAAGATATAATTGCTTATGCTATGGGCACTATAATAATTATACGTTTAGAAAATAAAATAAAATAGTTATGTCTGATGCGTTCGTGATATTACAACTAGGTTTTACAGGCGCCACTATTAGTGATTTACAGCAAGATTTAACAACTATCGAGTATTATGCAGGCGCCATTGATGGTGTATTTGGCACCAAAACGAAGAAGGCTGTTGTTCAGTTTCAAAAGCAATTTAATTTAAATGTTGATGGCATTGTTGATTAGGGACTTCCAAATAAAAAAATCTCCAATATCTTCTTGTGGAATGGGCAGGAAAGCCCGTTTATTAAAGAAGGCGGGCAAGGATGCCCACCCCACAAGATGGAGAATTAAATTTTTGGAAGTCCCTAAACTGAAACTTCTATATATAATGTTATGGTGACGTACAAAAGTGATTTGAGTAATGTAAACTGGGATGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATATTATTATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 758359-757934 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000007.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 758358 37 100.0 43 ..................................... TTCAATAAGATTGTAATATTCATTTTTATTTATCAGACCACCT 758278 37 100.0 41 ..................................... TTGTAAGAAACTTTGTGTCCTCCTAAGCTTAGTGAGTAGCA 758200 37 100.0 43 ..................................... TAAGCGAAGTACCATTATTGATACCAGCTCCTTGACCAGAGCC 758120 37 100.0 38 ..................................... ATCGTACCTATCTCTTTTGCTTGTTGCATACGTCCATA 758045 37 100.0 38 ..................................... GTAACAACATTTGTGTTACCGTTGCGAATATCGTTGGT 757970 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 100.0 41 GTTATTTACGACCTTGACCCCGAAAGGGGACGGAAAC # Left flank : TTGCACGAAAATATTTTGAATCACCTACTTGAAAACGATTGGTTGCCAACTCTTAAGTTAAGCGAAGATAACCTTAGAGTTTATCCCCTAAACGAGACCACAAAGCAACAGGTGCGGGTATATGGCAGTCCCCCACCTTACGAACCACCTGATTGTTTAATTTTGTAAACACTACACTATTGTATAAAAGCCGTATGTAAACCCTGAAACCACCTAAATAGAATGGCGCCAGCAATTGTAAAAGATTGTAAAAATCAGTCTTAAATTGACGCAGCAAGCCTGTACAACTATTCAGGAGTAATGTTGTGCTTACAAAAGATAATCAGATTTTTTTGGTTTGAATACTGGCTTTTTTGCACTATAATTAAGTTAAGTAGCAATTTTTGGCGCCAAATCTTTTTTGAAGCGAGTACTTATTATCTAAGTGACCTTAAGCTCTCAGTAGTCCGGCGCAACTGCACCTTGAAAACTAAATACAGCAACAGCTTTTTAGTAGTAGG # Right flank : TTCAAGCTGAAAAACTGGGAAACGCCATCGAAAGGCGCCGAAGTTATTGAAAGATTACCTAACATTCCTACCCAAGTAGAATTATGAGATAAATTTCAACCTGAACGCGACTTGATTTTAATTAAAAACCCCGATAATTTAGGAGAATGTTATCTCGGCGTCACTAAATGCATTCGTGAATTACAGCAAAATCCAGATGTAGAAATTCTCGCTGACTATACGGGTGGAACTAAAACTATGTCAGCAGCGTTAGTTTTAGCGGCTGTTGATTGTGGTATTCCTCTTTATATTACTGTTGCAGTGGCCAGGGAGAACTTGATAAAATTTGAACGTGGCGAATATACACAATTGGTAAATACAAACTTTCCACTAGTTCAACGTAAATTTTAACAAGACTAAAATTAATAATAAGAGTATGCCAAAAACAAAACCTTTTAAAAGGCAACTAGAAAAAATGGCGCCGGGAAGAAGGACAAAAATAGAAGCTGCTGTTCAACAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTTACGACCTTGACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 995468-996976 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000009.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 995468 37 100.0 36 ..................................... ATAAAACAGGATTGTCTAAAACTAAGGTATTACTTC 995541 37 100.0 36 ..................................... GACTATTTTCTTTTAGGTTAAATACTCTTTTTCTAG 995614 37 100.0 37 ..................................... AAGTTTGTTGAACAACTGTCTTTTAAAACTTTCACCT 995688 37 100.0 35 ..................................... TAATATGGAAGAAACAATTTACGAAGAAGAGTTAG 995760 37 100.0 35 ..................................... AAAATGCCACAAGAGATAGATGACTATGTTCGTGC 995832 37 100.0 39 ..................................... AATCTAAACGCACTAGCCCCATGATTCGCTTTTATGCGA 995908 37 100.0 36 ..................................... CCCACTACAACGCGGACAGTCGAACACGCTATCGAA 995981 37 100.0 36 ..................................... CTTTAATAGATGTAGGTGTTATTAAAGAGAAACAGA 996054 37 100.0 40 ..................................... TTAGTTAATGGCGAGAGTAGAAATTCATTATCACTTCCAA 996131 37 100.0 38 ..................................... CGGACAAGCATTAGACTTCTTGGTTGCAGCAGATGGAG 996206 37 100.0 37 ..................................... CATTTTCTAACTTGGGGACTATTAACAACAACTCCTC 996280 37 100.0 38 ..................................... TTGTCGTTTTACTCATGGCGCAATACAGACGGCTCTAA 996355 37 100.0 36 ..................................... CCAAATTTACGTTTGATTTGTCAAATGCCAACAGGG 996428 37 100.0 37 ..................................... CCTTTCTGTTGCATCTCTAAATCATATTGTAGACTGA 996502 37 100.0 37 ..................................... ACCGAATGCTTTCGAGAATAGTTTGCGTGCTGCCAGT 996576 37 100.0 38 ..................................... GTTTGATATTTCAATGGTCAAATTACCGCACCATCCAG 996651 37 100.0 36 ..................................... CAGAAAAAGTCAGGTTTTATTACTGAATGGAAGAGT 996724 37 100.0 34 ..................................... AACTTATACCGTTAGGCAATCAAGATGAAGTTAC 996795 37 100.0 35 ..................................... CTCACTCGATAAAACTTCTCGACTATTTTTATCAA 996867 37 100.0 36 ..................................... TTACCTTGTCGCAAATCCCCAAAACTATCCCAAAAA 996940 37 94.6 0 ........T..........T................. | ========== ====== ====== ====== ===================================== ======================================== ================== 21 37 99.7 37 CTTGATACGTAGCGATACCCGCTTGCGGGACTGAAAC # Left flank : TTGCTCAGTTCCCAAAGGTGGTTCCCATTGTGTTAGAAAGTAGATTAAATCGTTTGCCTGTTTCAATTGTGCAGCAAGAATACGACCGTATTGTTACTCTTATTTCATAGCTATAGGCGCCGAAGTTTCTAGTTTAGTGTTGATGCTCCAAATTTCAATATAATTAGATAACCCTGCCATTTGCTATAAAATTTACCGTACTTTACCTTTGTTGGCGCCGAACCTTGGTAAAAATATCTATAAACTTAAAGAGTTGGACATTTAACTAACAATTAGTTTATGATGTTAGTAGATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTAGACAAGTTAATAGTTACAGAGTTTGGTTACTTGAGATAAATAAGAAATTGTCTCAATAGGAGCGCTTGAAATGAGGTCATTTTTCAGACCTGACAAAACAGATTGTAGAATCCTTGCTCTATAAGGGTTTCCAATGGCGGA # Right flank : CCAGTCTCAACTCAAGAGATTGACCCTAAGTTTAAGCTTGATACTTAGGGTCAGTTATTGTATAAATTGTAAGTCTTTTGAATCTCGTCAGCTATTTGTTGGCGTAAGTCCCAAGGTAATAATACTTCGACTTTTGAGCCTAAAGCTCGTAGCCATCGGAGTACGTAATAATCTGTGACTCGATAATCTACTCGGTAGTAAGTATCTGTGCTTGGACGTGATTTAAAGGTTTTTAGTAAGTTTTTTTGCTGTTCTGGGTCTTGTGTATTTTGTTGGATTAATTCAAATACTGTTTGATGTTCTATTGGTGTAAAGGTTTCGTGAACGTTTATTCCTCTCATATAGTTGTCATGAAAATTCTGCTCAAACCTTAATATCATTAGTGATTTAGGTTTGTAAAAGTCGCATCCCCAAGCTTCTTTTAGTTTATCGTTTACAGTTTTTGGAGTATATAATTTATTTTGCCGATGTTGGTCTCTTAATAGCTGTGGAACACGGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGATACGTAGCGATACCCGCTTGCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1016118-1016811 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000009.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1016118 37 100.0 35 ..................................... GCTAAATTCTTTCTTTTGTGCCTCGTATATTAAGT 1016190 37 100.0 36 ..................................... GTCTACCACCTTCTTCTATATTAAATGGATTATAGT 1016263 37 100.0 35 ..................................... ACTGCATATTCGCTAGCTCTATTTGGGTCGAGTTC 1016335 37 100.0 39 ..................................... AAATTAAAAAGACTGAAAAGAAAAAAGTTGCCCGTGGTC 1016411 37 100.0 35 ..................................... ATAGTATTGATGGCGCCGAAATTGGGCTAGCTTTC 1016483 37 100.0 35 ..................................... GCGCCGTTATTGCCGAGAAATTAACTAAATTCAAT 1016555 37 100.0 36 ..................................... CTTGATTACTTTAAGGCGCCGTTTCTCCTCGGTCGG 1016628 37 100.0 37 ..................................... CAAACTGGTGCATGGGAGAGATGGGAATACAGGAAGC 1016702 37 100.0 36 ..................................... ACTTAATTGATTATTTATTTGGCTTGTACTTTATTA 1016775 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 100.0 36 CTTGAAACGTAGCGATACCCGCTCGCGGGACTGAAAC # Left flank : TTTACTTGATTATTTACGACCTGCCAGATAACAAAGCCGCAAACAAACGTCGCAATCGTTTACACAAAATGCTAAGTGGTTATGGCGCCTGGACGCAATATAGTGTGTTTGAATGTTTTTTAACTGTGGTAAAATTTACTCAAATGCAAATTAAAATTGAAAAGCTGATCAAACCAGAGGAAGATTCGGTGCGTGTTTACGTACTTGATGCTGGCGCCGTCAAACGAACCATAACCTACGGCTCAGAAAAACCTCGACAAGAACAAGCTATTATTATATAGTTGGTTGATAGCTTGATGTTTGGCAGACCGAAGCGAGGTCTAAAACCTAGGGGGTTCTGCCAAAAACGCCAGAACCTAGACAAATTAATAGTTACAGCGTTTAGAAAATCAAACTAAATGAGATATTATCTCAATAAGAGTGCCTGAAATGAAGTCATTTTTGAGATCTGCCAAAACCGCTTGTAGAGTCCTTGCTCTATAAAGGTTTCAGATGGCGGA # Right flank : CATCAGATTTGTTTGCATACAGTTTTAAGTGTTTGCCGCAACCAGCTATTAGCATCATCTTTGTCTGTTAATTGACTCCATATCATTGAAACAGTCCAAGGTTGTATTTCTAGTGGTAGTTCAAAAATCTCTATATTAGCTAAATTAGAGAAATAGGCGCCAATTCGATATGGTACTGCGGCAATCATATCGCTGGATGAAATAATTGCTGGTAATATTAATAAATGTGGCGTGGTTAGTTGAACACGACGTTGGAGATTATGAGTTGCTAGAATTTTATCAATTTCACCTGTTGCATCTTGGCGAAGAGTAACTAGTACGTGGGATAAATTGGCAAATGTTTCTAGAGAAATTAGTTTATTCTTGATGGCAGGATGCTTTTGACGTGCGATTCCAACAAAACGTTCTTGAAATAGTGGTACACAAATTGTTTGCCGAGGTGGATTTGGAAACACGCCTAATCCTACTTGAATTGTACCTTGTTCTAACATTTCCCCTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACGTAGCGATACCCGCTCGCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1160546-1159343 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000009.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1160545 37 100.0 36 ..................................... TACAACGATGGTGGCGCCACGACTACAACTGCTACT 1160472 37 100.0 35 ..................................... ACGGTATTTAACAAATACTTCTCTGGCAGAATTCC 1160400 37 100.0 37 ..................................... CACTCTCCAGCGTGATAACCTATCATTTTTCTAACTT 1160326 37 100.0 38 ..................................... TCCTTCTTTCCCAAGCATTGCACAAAGATTCCAGCGAA 1160251 37 100.0 34 ..................................... AATGATATTGTTTTTGATAGCATATTCCCATATT 1160180 37 100.0 35 ..................................... AAAGTAGCCGTAGCTTAGGGGGTCTGTGGCAATGG 1160108 37 100.0 35 ..................................... TCTTGTACAAATATAAGCTCTTTTCCTCTAAAAGT 1160036 37 100.0 37 ..................................... CAAAAGCTAAGAAGCGACGCTTTATCCCAAGCGGGCA 1159962 37 100.0 37 ..................................... CTGAATTTAACACCCTTGCCCAAGATAATGCCCACAT 1159888 37 100.0 37 ..................................... GTATGCAGCATGGTAGGATTTTAAAACCGCCCCTAGT 1159814 37 100.0 34 ..................................... GATGTTATTGACGCGCAACCTATGACTGATGCTA 1159743 37 100.0 37 ..................................... GAAGGGGTATAGATAGTAGCTATAACCCTGGTGACGA 1159669 37 100.0 38 ..................................... GCACAGGGTAGCTAATAAACATTTCATTCTCGCACTTC 1159594 37 100.0 33 ..................................... AAAACGTTTTGGGCATTATCTGGAGAAATATTG 1159524 37 100.0 33 ..................................... GTATAAAGATTTCTCGCTAATGCGGCAAATAAC 1159454 37 100.0 38 ..................................... TTTCCACTTTTGCTCTGGTAACACCGATTGCCACAGGC 1159379 37 97.3 0 ...A................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 99.8 36 ATTGCAATATTAAATAATCCCTTTCAGGGATTGAAAC # Left flank : ACTAAATATAAAAACAGGTGTTACAAGTAGCATTCAAGAAGTTGTTATTAAAAGTAAACGCTCAGTTCCCTCTATGTGTTTTGGGGATGCTGTGTTTTCATTTCAAAGTTATTAGCAATACATGCACCCGCAATTTATTATAATATGTTAATATATTAAAGCAATTATTGCGAGTGCCATGACTCGGTTTTCACAACCAAGCCGCACAAGCAATACTATATAGATAGTGATGCAGCTTTTTTTGGTCAGGCACCGCGAACCATAGGGTGTTTTTTTGGCAGAGTCCGAATTTATTGTGTAAACACTTGTCCAGTATAGCTTTGAAGCATTCCACCTATTTACAAGGTTCGCGGTAAGTCTGAAACCCTTACCATAAAAACGTTTTAGCCATTTTGAACGGCGCCTGTCTTGACACATTAACCTCTAAAACGCTATTCTTACTTTAGGTTCGCGGAACAGCACCTTGAAAACTAAATACAGTAAAGCTTCTACGCCAAGCA # Right flank : ATCAGGATAAAGATACAGCAGATTGCGTAATTATGAAATACGTGTAGAGACGTTACATGTAACGTCTCTACAGGATTTGGGGTATTATGTATGTACTTCTGGAAATTAAAATTTGCTGCGATACAAGGCGCCACTGTTATTTATTATGTAAGATAAAGAAGAAAAGTAATATTAGTATAGTTATGATTGTTACAACAGGGAACGATGTTGCAGGACGCGCAATTAAAAATTACGTTGGTATAGTGCGAGGTATTGTTGTACGCTCACCAACGATTGGACAAGGAATAATGGGTGGGTTGAAGCAATTAGTTGGTGGAAACATTGAAGCATATGCAGTAGCTTGTGAACAAGCACGGCAAGAAGCATATGACCGTATGATAAAACAAGCACAAAGTTTAGGCGCCGATGCTGTAATTTGTATGCGTTATGATGCCACAGAATTTGCTGAGGGAGTAACTGAAGTACTAGCTTATGGTACAGCAGTAAAACTTGAATAAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATATTAAATAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 1741844-1740945 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000009.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1741843 35 100.0 38 ................................... TTCTACTTTCTGTTATCATGGATTGTGTCCAAAAAACG 1741770 35 100.0 36 ................................... ACTTTATTTTCACCATTCATAAACACAATGACCTAA 1741699 35 100.0 36 ................................... ATGTTGAGGTAACAAGATTATGTTACTAAAACCAAA 1741628 35 100.0 37 ................................... TAAAAAAACGACATTGTTACATTGTCATCAGTGATGG 1741556 35 100.0 37 ................................... ATAATACGATCGCAATTAGTTCCATTTTCCAAACCTC 1741484 35 100.0 35 ................................... ATTTTTTTGTGAATTTTTACACTTCCAACCCCATA 1741414 35 100.0 37 ................................... AACAATTCTGAATTTCATAGCAGATATTCTCAAACAA 1741342 35 100.0 39 ................................... ACCATAAACAACCTCTTGCCTATTATTCAGGCGTAAAAA 1741268 35 100.0 39 ................................... TCTCCTTGTGCCTGCTGATATAATCAGGGCATAATTAAG 1741194 35 100.0 36 ................................... AAAACAAGGAAAACTCTCATAAATTTTTCATGAAGT 1741123 35 100.0 38 ................................... TAAACAGTCATTTTTAAAGCACATGAAGTGCAAAAATG 1741050 35 100.0 36 ................................... TTAGCCATTATTTTTTCTCCAAGAATACAAAGTATA 1740979 35 97.1 0 .................................G. | ========== ====== ====== ====== =================================== ======================================= ================== 13 35 99.8 37 CTTCGACTTATAAAAAAAGTCGCTTGATTGGAAAC # Left flank : TCTACCACTACTTCTAAAATACAAGGTTTGGTTTCGCGCAAGCATAACTTAACCTTGCATCTTTAGCATGATTCTATTTTTGCATACTGGAGGGGTGACAAAGGCGCCTGTCATCTCCAATTCGCAATTCGCAATTCGCAGTTCTCAATTATACTGCAAGCAGATAGAATCTAAACTCATGTCATACCGAGAAACTGTCATGCTGAGGAACGTAAACGGAGTTTTCCCGCAGGATAGCATCTTTAGGATTTTTACGTCATACACCATTGATTAGTTTCACTTATTATTTGGCTGTGACTGATAAGCATCTGAGGGGGTCATACAATGTCTGAAACCCTTATTCTCTCGTTGACCCCCTCAGATTGATTGCTACGTAAAAGTTTCAAGGTATTCGTGTATGGATTTATTGAGAGTAATTATTAATAATTTCAAGATAATCTTGACCCCCTCAGATTATGGGGTTTACAATGGTTACTACACAAGCCTTTCAAAAGCTTGCC # Right flank : TAATAAAAAATATAAAAAGGGTCAAAGCTGTTGCCTCAACCCTTTTTTATTAATCCACGTCTTAGTGTGTGAAAGTAGTTTTGTTTTATTTGTAGTACAGATAATAGATAATCGCGCACCTTACTTTAATAAGTTCGCAATATCCTGTAGCTCTTGCTGCAACTGGCTATTGCCAACAAATAAGCCAAAATGTATAATAACTTTTAAAAAGTGTTTTTTGACTTCTTCTTGATAGACTGTTAAAACATCTTGATAGTTGCTATTTTGTTTAGTGCCCAATAAGTATTTTATAACCTCTTCGGCTTCTACTCCCAATAAGTTGTGCATTAATTGGTTACGATGGTCGTCTTCATATTCTCGTTCGTACTGACTTACCCATTCTAGTAAACCCCACATTAAAGGTTTAAAATTTGGTTGTAAATAACATAGCCATGCAAGCATTCCTGTGTTACTTCCAATCACGCTAAAATTACCATAATCGCCTTTATGCAGTTTTTCTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGACTTATAAAAAAAGTCGCTTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 1746266-1744844 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000009.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1746265 35 100.0 36 ................................... TTATAGCTTCAATGGAGCTTCGTCATGCCAAACAAA 1746194 35 100.0 38 ................................... TGTTTTCATAGTTTTTTGGTGCTATGCACTAATTTGAT 1746121 35 100.0 35 ................................... TCGTTTTCATGGATTTTTTCCAGTAAACTATAAAT 1746051 35 100.0 38 ................................... AATGATAAGTTTCTTCATTAGAAACTCCTAAATAATGA 1745978 35 100.0 36 ................................... TTTTAGGCCTGCACAACAAAGGGGCAGGAGATAAAG 1745907 35 100.0 38 ................................... ATGTTTGACTCCAGAATGTAAATTATGCAAAGAAATTG 1745834 35 100.0 38 ................................... ACAATGATAAGTTTCTTCATGAGAAACTCCTAAACAAT 1745761 35 100.0 44 ................................... TGTATTCATGCTTAGATTGTTCTCTAAAGAACAATTGTTCGGTT 1745682 35 100.0 37 ................................... TTTCATAGTTTTATTGCGTTCATTTAACGCAAAAGAA 1745610 35 100.0 42 ................................... TTGATGGAAGAAGCAGCCTTTCTAGTGATAGTAGCCATAATG 1745533 35 100.0 36 ................................... TTTACAAACCACTTCATAAAATGACCTCAAAAAAAG 1745462 35 100.0 36 ................................... TGTTGTACTCAAGGCGTAGATTTTCTAAATCGCGAA 1745391 35 100.0 40 ................................... TTTGTAAGCATGTTGCCTCCTTGGGCATAAAGTAAAAACA 1745316 35 100.0 37 ................................... AAGAGTGGGAATCAAAAGCAACAATACTTTTTTCATT 1745244 35 100.0 41 ................................... ATTACTCAGCTTTTACTCACAATTTGACTTATAGTGAGCAA 1745168 35 100.0 38 ................................... AATCTTGCGCTTCTTGGTTCATAAAAAAAATCTCAACT 1745095 35 100.0 36 ................................... TTCGCGTACATAATTTTTCCTCCTGGAAAAATATCG 1745024 35 100.0 36 ................................... AGAGTGGGTAGTTATCTTGGATAACTTTAATAAAGA 1744953 35 100.0 40 ................................... AGTCGTAGGTCTTTCATAATGAAGCCATAATAAAGGAATA 1744878 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== ============================================ ================== 20 35 99.9 38 GTTCGGCTTATTTAATAAGTCGCTTGATTGGAAAC # Left flank : CAAGATTTTTACACCAGAGGAATTTACACCACCTGATGAAAAAGGAGGAGTGTATCTCCAGCCTCACTCAATCAAAAAATTTCTCAAACACTGGGAAGAAAAGCTACAATCGGAGATAACACATCCCCATACAGGGTATCAAGTAAATTTCCGACGATGTATAGAATTACAAGTATGGGAGTATGTTGCTTGTTTAATGGGAGAAATTGATGTCTATCGACCAATGGTTTGGAAACTATAGTTCTTTTGCATTGGCAAAATCGACTTTTATTAGTTCAACTTATCAATAAATCCTGATTGATAAGCATCTGAGGGGGTCAGCTAATGCCTGAAACCCGCATTCTCTCGTTGACCCCCTCAGATTGATTACTGCGTAAAGCTTTCAAGGTGCTAGAGTATGGAGTTATTGATAGTAATTCTTAATTATTTGGCAATAATATTGACCCCCTCAGATAATGGCGTTTACAATGGTTACTACACAAGCCTTTCAGAAGGCTAGG # Right flank : TAGTACAACAAATATATAAAGGGTCGAAGGTATCGTTTCGACCCTTTTTTGATGTGCAAAATTCAAATCATATAACCCATATACAAAGTCATATAAAAACAACTTTTACTCATACACGGACTCATATACAGGTTTGAGACAATGAAATTAAGTCAGAAGTAAAGAGATAACGGCGCCACTAAAGCCCTATCATTCTTTTTATTTTTAACTTATATCCTTTTACCTTTTACATACTATGTCTGTAATTTACCTGACCGAGAAGAAAACATCATTTAAAGTTCAACACCAGTATTTGAAGATGTTTTTTAATGGAAGACAGCGTACCATTCGCATTCGTAATATCAGCCAATTCATTATATTCGGCGCCATTAAGTTACCGAAAGATGTCATGCAAATTATACGTCTTAATCAAATACCCGTCCTTTATCTAACAGAAAACTTGGATTTTCTAGGACGTGTCGAAAATCCATCGTCATTGCAAACTAAATACCTAACTCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGGCTTATTTAATAAGTCGCTTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2357808-2358905 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000010.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2357808 36 100.0 36 .................................... TTATCAAATCGTGGTGGTAATTTTTAATCCTTGACA 2357880 36 100.0 36 .................................... TGGAATCCATGCTCAGGAATTGTGCGGATTACTTCT 2357952 36 100.0 34 .................................... TGAAATCGCTGTTTCTATCGTGTGTGTCAACACT 2358022 36 100.0 35 .................................... ACAATTACAGCTACTAATACTTTGCCTAATTTAAC 2358093 36 100.0 34 .................................... TAACTATTTCGTTTTTCTTCTGTTCGTTTAAATT 2358163 36 100.0 34 .................................... CAACACCCTGCCCTTGGTAATCATCCTTGACTTC 2358233 36 100.0 36 .................................... TAATCTATTACGACAAAGCCAACATATCCGTACTTG 2358305 36 100.0 36 .................................... TAAATGAAAAATACAAAAGCAGCAGAAGAACTAATT 2358377 36 100.0 35 .................................... TAAATCCGTCAAATTCTTGATTTGTGATAGGGTCA 2358448 36 91.7 35 .....G......A........T.............. AAAAAGTTACAAGCGAATTTGAAGCAATGTTGCAG 2358519 36 91.7 35 .....G......A........T.............. ATTACGCTGTTGGGTGGTACAGTTAAAGCGCGATT 2358590 36 91.7 35 .....G......A........T.............. TTCTTCTTTGGCGCGCTCAATCAATTGCTCTTGAC 2358661 36 91.7 37 .....G......A........T.............. CTGATTGCTTGGCTTCTTCTAAATTAGTTATATCGCT 2358734 36 91.7 34 .....G......A........T.............. GTTAGAAATTATCAACACGCGCGGGACAGGTATC 2358804 36 86.1 30 .....G......A........T..A..........A GAACGGATGCGGAAAGCCTCAAATAACTTC 2358870 36 86.1 0 .....G..............AC..A.....A..... | ========== ====== ====== ====== ==================================== ===================================== ================== 16 36 95.7 35 GTGTTTTAACCTTAGATGTCGAAAGGCGTTGAGCAT # Left flank : TGACCTCTCAGGCAAACGCCAACTTAAAAAGAGTAGGAAAAAACAACTGGCGCCGTCCTAACAACATCTTTGTTGTGGCACAGGCATCTTGCCTGTGCAGTGATAATTTGCAACGGATACAACGGATGTAACGGATAAGTTATTCGTTATGAACAGACTTTAGATTGTTGGTTGGGTGCAGCGTAGCGCAACCCAACACCAAGGAAAATTTTTGAATTTGGATGCCACATACAAATAAACATGAGTTTAAATGCAAGCACCTCTAAGTGCGAAGTCAAAAAGTATAGCATTTCCACTTAAAAAGCTTACAGGCATAGAATTTAAACACTTTTACAACTATTACAGGTGCTTGCAAAATGCTGAAACCCTTACTGACAAAGAGTTTCAAAAGTCGCTTCTTCCGATGTTTGAACATTCTCAGAAGCTGTATTAGCTTTTTGCAACAGGTGCTTGTAAAATTGTTGAAGGAGCATTACCACGTAAGCCTTCCAGCAGGTGCC # Right flank : TTTTGTTTTGGCTTGGTGAAAACTTTTGAGGCACAAAGCATAAGTCCTTCTCGTTTACTGAGAAGGCTCAGTTATTTTTTTGATGTTTCAAGTAGTTAAGTTAGCAATTTATGCTATAGTCAATTTATAGACGTGTAAAAACTTGGAGTTAGCAAGTTTATGGAGAGTCGGCAGCTGTCAATTTTTGATTACGCACAGCAGAGTCCTGTAAAACAGAAATTTCCTTTTCCAGTAGTTACTTCAATTGCATCTCGATTAATAAACGTACCTCCATCAACTTTACTTCGACATAAGCAACAGCCATTAGTGCGAAGATTGGGAAATTGCAATTTTCTAGTCTGCTACGCTGGCAAGGTGCGTCGTGATTGCACGTGAAATATAAGTTGGGAAGCACACGAATAAAATATTTCAGTCAAAACATGGTATTGTGGTTTTAACCTGTGATGCCACACGTTATTAAACTTGGCTTTGAGCATTTTCACGGTGTAAAGTTATTGAGG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTTAACCTTAGATGTCGAAAGGCGTTGAGCAT # Alternate repeat : GTGTTGTAACCTAAGATGTCGTAAGGCGTTGAGCAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2366329-2368153 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000010.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2366329 36 100.0 36 .................................... CTGCTACGTTACGCTCTACCTCTTCCGGGGATATCC 2366401 36 100.0 37 .................................... TTTACCGTATCTCATTAGCTTCTAACCAAAATAGACC 2366474 36 100.0 36 .................................... TCGCCGTTTCCCTGTAATTAGGCGGCAATGATGAAG 2366546 36 100.0 35 .................................... TTGGTCAATCAAGTTAGAAATTACTACCTGATATT 2366617 36 100.0 34 .................................... CTTGACTCAGTAGTAACCAGATTTGGAGTAAGTA 2366687 36 100.0 36 .................................... TACAGCTATTTGCATTGGGTCATCATTGGGTGAGAA 2366759 36 100.0 36 .................................... TGATTGAAAGTTTTTTCCCAGAAGTACAACCCAATT 2366831 36 100.0 36 .................................... GTATTAGGTTCTTCAGTAGGCGTTTAGTTAAACATT 2366903 36 100.0 34 .................................... TGACTTCAGGGACGTTCATAGCTGGTAGAGGTAG 2366973 36 100.0 34 .................................... CATTTAACCATTTGGGGTCGTTTGTCACTTGATA 2367043 36 100.0 36 .................................... AATTAGTAGCGAGCGATATAACCAATTTAGAAGAAG 2367115 36 100.0 36 .................................... AAGACTATTTAACGCCTGACGAATACTGGATTGATG 2367187 36 100.0 35 .................................... TTTAAATGGTAGTTTCGACCAACAACCTTTGCCAG 2367258 36 100.0 35 .................................... TAATCAAAAAGCAGCTAGTAAACTGCAATTCAACT 2367329 36 100.0 35 .................................... AGATACTGAAACACTGTTGCTGACTGGTATCTACC 2367400 36 100.0 36 .................................... CTAAGAAATGTGCGAAAGAGATGGAATTGAATCCAA 2367472 36 100.0 35 .................................... AGACAAACCCTTGGATGGGTAACAGCCGTGAAGAG 2367543 36 100.0 36 .................................... AAATCCCTTCTTGAATTTAATTGGGTAGCAAATATC 2367615 36 100.0 36 .................................... AGGTAAGTAATGGGTTTCAGCAAGTAGAACTAGAAA 2367687 36 100.0 36 .................................... GCAAGAGATAGCTTTACTTTAATCCGTAGGGTAAAT 2367759 36 100.0 36 .................................... TTCTTTCGGTGATGACTTCTTTGAATTTACTTTGCC 2367831 36 100.0 35 .................................... GGAGGACTGGTAGTGATTGGAGGCGCCAATATTTG 2367902 36 100.0 37 .................................... TGCAGCTATGTTTTATCATGCGACTAAAAATAGGTGT 2367975 36 100.0 35 .................................... TAGTATGATGGGTGCGGGTGTCGCATTTCCCGTAG 2368046 36 94.4 36 .....................T.............T CACTCAATTGAATTAATGCGAAAGCGTGGATGGTCG 2368118 36 75.0 0 C...........C........T......CAT.AA.T | ========== ====== ====== ====== ==================================== ===================================== ================== 26 36 98.8 36 GTGTTTTAACCTTAGATGTCGCAAGGCGTTGAGCAG # Left flank : ATTATCATTAGGCGAAAGTCGAGATTTAGTAAATGCTGTCAAACTTTGGTCAGGTAGTTTTAATAAACAACCGCGCTGGTTGGTTCAAGACGAAGATGGAACATTAGCATTACCTTATTGGGTAGACCACGTTGGCTCACAAGGTACTCGTTGGCGCCGATACCTACTTCGAGAACAGACACAAACCCATCCACCAGAACAAGCTTGGACAATAATTCAAACTGAATAAGATTTACCAAGCATCTAAAATTGCAAGCACCTTCGAGTGTGAAGTCTAATAAAATCACTTTTTCACCCAGAAGGCTTGTAATAACAGGGTTAGGAGTAGTTTTCAAGTCCTTAAAGGTGCTTGCAAAATGCTGAAAGCTTTACTAGTCAACAGTTGTAGAAGCCCAATTTGCTCACTGGCTTTTGCAATCAACCTCTGTAATAGCATTTGGCGCCAGGTGCTTGTAAAATTGTTTAGGAGGCTTTGCTGCATAATGTTTTCAGCAGGCGCT # Right flank : TTTGTACAACTTATTACAATTACCTTACAGTCATTTATGGAAACTGTTCAATACCTTGACCTCAACACCAAACTTGAAACTATCCGTGTGTCTTCACTTCACGCACTTGCGTATTGTCCTCGTCTTTTTTACCTTGAAGAAGTTGAGGAACTTTATACACAAGATGCAGCAGTCTTTGCTGGGCGCCGTTTACATACGGAACTTGAGAAAAAGGAAGATGAAGAATGGGAGGAATTATTTCTTGTTAGTGAAGAGTTAGGTTTGCGTGGACGTGTTGATGCGCTACGAACTCGTGATGGAGAAACTATTCCTTATGAACACAAGCGCGGACGTTGCCATCGGGATGAAAAGAAGCAACCGCAAGCTTGGGAAAGTGATAAGTTGCAGATTCTTGCTTATGCTTGTTTACTTGAATCAGCATTAGGTCTTCCAATTAAAGAAGGTCGTATTCGCTACCATGCTGATAATGTTTTGGTACATGTTCCTTTAGATGATGCAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTTAACCTTAGATGTCGCAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 2370417-2371525 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKB01000010.1 Calothrix desertica PCC 7102 Cal7102DRAFT_CDB.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2370417 36 100.0 35 .................................... AATCTTAAGACAGCACGCAAAGCAATCAGGAATTT 2370488 36 100.0 35 .................................... GTAGTATTTCTGGAATGTGCTAGAGAGATGTTGCT 2370559 36 100.0 36 .................................... GGACAATGCGATGTTAACAATGCATGGCGCCCCAAC 2370631 36 100.0 35 .................................... CAATGTTTCTTTGTCAAAACCTCAATCGATAGACC 2370702 36 100.0 35 .................................... AACTATCACCAGCAGGGATTTGAGATTCTAGATAA 2370773 36 100.0 36 .................................... TACTTACTTCAAATTTGGTTACTACTGAATCAAACG 2370845 36 100.0 38 .................................... TTGCATCTATACCTACTTAACTCAACTATAAATAGGTT 2370919 36 100.0 35 .................................... ACCACAGTTGCCACATGTTTTAGAAGTGTAAGACT 2370990 36 100.0 38 .................................... ATGTAAAATGTTTGTAACCAAGGGAGAAAGTTATGTTG 2371064 36 100.0 34 .................................... TTTTGGGCGTCTCTGTTTTCGCAGACGCGGCAGA 2371134 36 100.0 35 .................................... AATACAGGTCTAAGTTCAAAGAGATACTATCAGAA 2371205 36 100.0 34 .................................... TAAGGATAATTAAATAATGTTAACAAGTCAAATT 2371275 36 100.0 36 .................................... TATATGCACCATTAGCAAGTGGAACTAATTATGATG 2371347 36 100.0 35 .................................... ATACTGGCACCGTTACTAGCTACCCTATTGAAGTC 2371418 36 100.0 36 .................................... GAAATTACACGCGCGCTGGTTTCTGCAAAGCAATTT 2371490 36 94.4 0 ..............................A....T | ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 99.7 36 GTGCTGTAACCTTAGATGCCGTAAGGCGTTGAGCAG # Left flank : GTCAAAAACGATGGCGCAAAGCTTACAAACTTATAGAAGGATACGGCGAAAGAGTTCAATACTCAATATTTCGCTGCTGGTTAAGTCAACGCACGCGCGAAAAGTTACGTTGGGAATTAGAAACAATATTAGCTACTGAGGACAATATCCTATTTATTCGTCTCAGTAACCGCTGTGTCGAAGATATCCCAAAATATAACCGCCCTGGAATATGGCAAAATCGAGACGAACCTTTTTTAATCGTCTAAAATTACAAGCACCTCTGAGTGTGAAACCAAAAAAGACAACTTTTTTCGCTGTAAGACTTGTAGCAGGATAGTTTAAAGCCTCTTTAAGTCTTTAGAGGTGCTTGCAAAATGCTGAAAGGCTTACCAATAGAGAATTACAGAAGTTAGTTTTTTCTCTTTTCTCATATAACCAAGTTCTGTAATAGCTTTTTGCACCAGGTGCTTGTAAAATCGTCTAGGGAACTGCGCCATACAAGGATTTTGGAAGGCGCC # Right flank : TGAACTGCCATAGCTAACCCCAGAGTAGCAAATTGGGGTGTAGCCTTATACGGTTAATTAATAATCGGCAATAATAAAGCCACCACTAACTAAAAACCCATAAACAAGTAGCCCAAATACATAAGCGATATTTACACCACCGATAATGGAAAAGAACTTAATTAAGTTTTGACGTTGCCAATTAAGCGTTAAAATCAAACCAGTTCCAAGCAGGGCAAATAAAGCCGCAATAAACATTATGTGCGACTCATTCAAATTTAGTAAAATATTTGTTACTGGTTTAATTTTATAAATTTGAATTATTCCCTGATAGAAAATATTCAAACCGATAACTAAACTAGCAAACACCTGTACATATCTATTTGGATATTGCCAAATAATAATTGCCGCAAGAATACCAAAAATAACGGATAAAAAGATTAATATATTTGACCAAGTATTTTGATTGAACTGAGCAAACCAATTATCTGACTTTAAAGTTTGTAATTGCTGGCTAGTCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGTAACCTTAGATGCCGTAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //