Array 1 146802-141893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018044.1 Bifidobacterium choerinum strain FMB-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146801 29 100.0 32 ............................. GCGGCGATAGGCGAAGCGACAGTAACCGCCGA 146740 29 100.0 32 ............................. ACCCGGCTTAATTTCCAGCAGCAGCGAACGAA 146679 29 100.0 32 ............................. GGCGAACAACCGCAAAAGAAACGTATCACATG 146618 29 100.0 32 ............................. GCCGCTCGGCAGGACCGCGTGCTATCCGGCTA 146557 29 100.0 32 ............................. AGACGCACGGCGTCGCGCGCGCTTCGCCGCGT 146496 29 100.0 32 ............................. TCGCTATGGGCGACCATGACGCTGTCCAGCGC 146435 29 100.0 32 ............................. TTGATGGGCAGCAGGCCGTCGGTGTTCGTCGC 146374 29 100.0 32 ............................. GCGACGATCATGCCCATCGGCATCGGCGGCGA 146313 29 100.0 32 ............................. GACTGCATCCCGAGCGCGCCCACTGTCCGCAC 146252 29 100.0 33 ............................. CGAACTCACATCCATCTCGCCGGATCGTCTCAG 146190 29 100.0 32 ............................. ACCACGATACCGGTCACGGCGACGGCGACGTA 146129 29 100.0 32 ............................. AGATTGCACTGCGTCTCAAACAAATCGACGGA 146068 29 100.0 32 ............................. CCGTGGTCTACGATGGGCTATTTCCTCGCATT 146007 29 100.0 32 ............................. TGCTGATTGAGGGATACGAAACCACTGACAAC 145946 29 100.0 32 ............................. CGCAGCTCGTTGCTCACGAATGAACCAGTCGG 145885 29 100.0 32 ............................. TGGGACGCTAACACCACGAGCATCGGCATCGA 145824 29 100.0 32 ............................. TTAAGAGTGGATAGCAAGGTTAGGCCATTAGG 145763 29 100.0 32 ............................. TCAAGGACTTACGTAAACTCTTAGAGCCGTGA 145702 29 100.0 32 ............................. GACCGCCTGACCGCTCTGGAAAGCATCGTCTC 145641 29 100.0 32 ............................. CACGCCCGGCGTGCCCGTGAGCGTCAGCACGC 145580 29 100.0 32 ............................. AATCAGGTGACGCTCGACATCCCGGATGGCGA 145519 29 100.0 32 ............................. AGTTCGACGCTGCGGCGGTGAACCACAGTGCG 145458 29 100.0 32 ............................. ACGTCCGCCTCAAGCGACGCCAACTTCTGCAT 145397 29 100.0 32 ............................. CTGCAGCAGGTGTCGAATCGTCTCACGCAGGT 145336 29 100.0 32 ............................. GCCGGTCCTCGCATCAAGCAGATCGTCACGAG 145275 29 100.0 32 ............................. ACTCTCTTCTCGATTTTCGGCACGCCGGATAC 145214 29 96.6 32 ............................T GCCGGTAGGTGACCGATGTGGCATTGCTCGGA 145153 29 100.0 32 ............................. ATGCGTGCGTCATCCGGGATATGCGCAACATA 145092 29 100.0 31 ............................. TGGCGATATTGGTTTGCGGGATACCGCTTAA 145032 29 100.0 32 ............................. TCACCGTCGTACTCACGCTTCGCGCGTCGCAT 144971 29 96.6 32 ............................T CGCCCGGTGTCGGACAGGCCACGGAGGCGGCT 144910 29 100.0 32 ............................. GTGCATAGCGTTATTGCGCATTGATTTCCGTC 144849 29 100.0 32 ............................. GTCGCGTTTGATAACACCGGGCCATCGAGCTT 144788 29 100.0 32 ............................. TGGTCGGAGAGGATCTGGTCGGCGTCGGCGGC 144727 29 100.0 33 ............................. TCCACCTTGCGGCGGCGCGGCAGCGAGAAGCTG 144665 29 100.0 32 ............................. CGAAGATCTATGTGTCCGTGTGGACGAATCAC 144604 29 100.0 32 ............................. ATCAACTGGCAGTTTTTGACGGGGCAGGTGGT 144543 29 100.0 32 ............................. GCGGGCACGGACGGATTGGACGCTGTGCGCAT 144482 29 100.0 32 ............................. TTCTTCGCCTCCGATTCAATGGCGTCGGCGTT 144421 29 100.0 32 ............................. CGCGGTGAGATACCAATGGTATCTAATGCGAC 144360 29 100.0 32 ............................. TTGAGGGACACGGCGACTGTAGTTTGAAAATT 144299 29 100.0 32 ............................. GTCTGATTACAGGCGACGCACGTCTTACCGTG 144238 29 100.0 32 ............................. AACAAAAAAATATCCGATAAATGGTTCAACGT 144177 29 96.6 32 ..A.......................... AAGCCCAAGGCCACAGCAACCACGCCGTGGCC 144116 29 100.0 32 ............................. AGATCTCCACCTGCCCGCCCGCAAACGCACGA 144055 29 96.6 32 ............................T CTCAGCCAGTCAGGCTAGCCGACGATCCATTC 143994 29 96.6 32 ............................T GTCCATCAATAGTCGGGGGCATTGCCATGCTA 143933 29 100.0 32 ............................. GTCAATGGACGCCTTAACCTCCGGCGTCACAA 143872 29 96.6 32 ............................T CGGATACGAGACAATCGAACAGTTTATATACA 143811 29 100.0 32 ............................. GGCTCCCCGTGTCGGTGAGCGAGATCAGCGCC 143750 29 100.0 32 ............................. TACAGTCGCGGCGGTTTGTGGACACGATCATG 143689 29 100.0 32 ............................. ACACGGCGTGTCGGATTTTCGACACACACAGA 143628 29 100.0 32 ............................. AATTAAAGAGAGAGCGACTAGCTGGGGCGTAG 143567 29 100.0 32 ............................. CCTATGACAACGACATGCCGATAGCCACAGAC 143506 29 100.0 32 ............................. TACGCGCCGGTCACGTTCGCTCTCGATGGATT 143445 29 100.0 32 ............................. ACTGTGAGGCCGACGTACGTGGCAGCGGCGAC 143384 29 100.0 32 ............................. GTCAGCCACGCCGCCGGCGCGTCGCCGTCGCG 143323 29 100.0 32 ............................. CAACCACGAAGACACCGCCCGCCGGGTGGGCG 143262 29 100.0 32 ............................. CCCAAGCATGGCACACCATCACCGACACCGGT 143201 29 96.6 32 ...........................T. CTCTTGCCGGTGATGTAGGACGCTTCCTGCTC 143140 29 96.6 32 ............................T ATGGTGCTTGAGTGGAAGCGCACATGGTGGTG 143079 29 100.0 32 ............................. GGTTGACGCGGAACGTCTTACCGACGGTAGGA 143018 29 100.0 32 ............................. TCGCCGAGGCATACGTGCAGATTGTGCCCAGC 142957 29 100.0 32 ............................. TGCAAACGCCGGTCGGTCGGCAACGTGATCTT 142896 29 100.0 32 ............................. CTGATTGCAGTTTGCAGCGTCATGTTGCTGAC 142835 29 100.0 32 ............................. GTGTACGGCGGATCGGACCACACCGACCCGTA 142774 29 100.0 32 ............................. GAGGGCCTCACGATGGTGGGGCGTCCCGCTAA 142713 29 100.0 32 ............................. GACCCACCTCCGTTCCGTCGCTGACGACCGCC 142652 29 100.0 32 ............................. ACGGCGCCCATGAGCGCGACGGACAAAACGTT 142591 29 96.6 32 ..........T.................. TGTTATTTCGATTTTTGGAAGGTGTTGTCATG 142530 29 96.6 32 ..A.......................... GCGGCGAAGCCGCCGCCGATCGCGGCGAGCGA 142469 29 100.0 32 ............................. ACGACGACTGACGCGTATTGCGGCAGTGGATC 142408 29 96.6 32 ............................T CCTCGGACAGGCGCGCGACACCGGCAGCCTCG 142347 29 100.0 32 ............................. GTGGACTGTGGTTTCTGCTTGTCGGCTGCGTC 142286 29 100.0 32 ............................. TGGATGACGGCGCTGGGCCGCAGCGACGTGGA 142225 28 96.6 32 .....-....................... GGCGTGGCGGACAAGTGCGTCAACGGGGTCAG 142165 29 100.0 32 ............................. AGTACGCGGCGGCGGCAGTGTACGCAGCAATC 142104 29 100.0 32 ............................. GACTGGCATAACTCATTGAATCTGTGGGATCA 142043 29 100.0 32 ............................. TTGCGGTCTGCGCGTATCGTGTGCCCGTCGAG 141982 29 100.0 32 ............................. GGGTGGTCGCGGTCATCACCATCGGTGCCGAC 141921 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 99.5 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GCTTGTCCCACGGGATTGCGTGGAGATGTGAGCCGCTGGTTGTTGGAGATCGCTCCAGGTGTGTTCGTAGGACATGTCAGTGCACGTGTCCGGGATAGATTGTGGGAGCGCATCGTCGATACGTTAAAGGATGGAAGGGCCATCATGGTCTTTTCGGCGCGTAATGAGCAGCATCTGGATTTTCGTGTGTTCAGATCGGATTGGCAGCCGGTGGATTGCGACGGACTGCAATTGATCCGGCACCCCAGCGAAGAAGATGCGGCCTTCGAATCCTTCGCTGGCGCGCCGCGACATGGCTGGAGCAATGCTGCGAAATACAGGCGTGCTCGGCGATATGGCGGGAAGTCGAGAGGATGATATGGCGAAGGATTCCAAAGAGGCGATTCTCGGGAAATAAGGAAATCGGAAAGAAAGCTGGAAGTGGAAGACGACGCGAGGAAAGTGAATGAAAATGGTTTTCGTCCGCTGCTGCTAAGCTGAAAATACAGGGATTTCTTAGT # Right flank : TTGATGTAGAGTCCCTTGTCGTAGGTGGTGTCTTCGATGATTTCGGATGCCGGTGTCGGCTCCGGATGCCGGCATCCGAAATCCCTGCCACATAGCGTGTGCGTACACGCTATGTGACGAAGCCTGTTTGCCGCGCATTCGTACTATACGTCGCTTGGGCGCGACGCCCACCCTCCGCATACTTCGCCCCGTATTTGTTCACCGGTGGCTATTTCCGGTTCCCTGACGCCTTTCGCGGCACGAAGATGGTAGTCAGCAAGACAGAGCGACGGCGGCGCGCAGCTGTCTCGGTCCGTGCCTGAACCACCAGTAGGAGGACATTATGGCAGACAAGCCAACCATTGCATTCGTTGAGACTTCGCTCACCGACGGTTCGTTCGAAGCGGACCTCGCCAAGGAGATCATGGACATCGTCGGCGACCGCGCCGAGACGATCACCGTCGACTACGAGGATCTGCCGCTCGCCGGCGAAGCCCCGGAATACCCGCTGCCGGAGGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //