Array 1 635559-637904 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822009.1 Streptococcus thermophilus isolate STH_CIRM_19 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 635559 36 100.0 30 .................................... AGTTTCTCAATTTTTTGTTGTTGATTTTGG 635625 36 100.0 30 .................................... TTTCGTCATCGACGTCCATTTCATCGATTT 635691 36 100.0 30 .................................... GCCAGGCATCAAGTTCACTGATGCAAATTG 635757 36 100.0 30 .................................... CGCAGTTTTAACAGAAGTGATAAGCAACGT 635823 36 100.0 30 .................................... TGCTCAAGATAACGGCATGTCTAGCGCTCT 635889 36 100.0 30 .................................... CTCCTTGTGTTCTTTCATAGTTGTATAGCG 635955 36 100.0 30 .................................... CTCGATGGCTTGGAATATAACGAGATCAAG 636021 36 100.0 30 .................................... ACACCATTAAAGGGACTTCTCAACACTTTG 636087 36 100.0 30 .................................... AGACATTGACTATGGTGTTAAACAAGACCA 636153 36 100.0 30 .................................... CCTTTGAGCTGTAAGCCTATAAGAATATCA 636219 36 100.0 30 .................................... AAGCAAGTTGATATATTTCTCTTTCTTTAT 636285 36 100.0 30 .................................... AAGACCGAAGTAACAAGAGCTCTCATTCGA 636351 36 100.0 31 .................................... CGCAATGGTTGCTGCTGACTTTGATTTTTAT 636418 36 100.0 30 .................................... AGTTTTTGGAAGATTTATCTTACGACGATT 636484 36 100.0 30 .................................... TCTGCCGCAGCGGGCGCACTGGTTAGCGCA 636550 36 100.0 30 .................................... AAATAATAAATTCCTCTAGTTTTTTTCTTC 636616 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 636682 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 636747 36 100.0 30 .................................... TGGCTTCTAGCGAGCCTGCTTGTTGCCAAG 636813 36 100.0 30 .................................... TGCGTTGCGTAACATGCCCGAAAAATTCAC 636879 36 100.0 30 .................................... AACTACTCTAAAACTAGAGCTCACAAATTG 636945 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 637011 36 100.0 30 .................................... TTGTTAACGATGGATCAGTTGAAGCTTATC 637077 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 637143 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 637209 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 637275 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 637341 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 637407 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 637473 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 637539 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 637605 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 637671 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 637737 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 637803 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 637869 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1354016-1353320 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822009.1 Streptococcus thermophilus isolate STH_CIRM_19 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1354015 36 100.0 30 .................................... TCTGACGGTTAGATATAATTTTACTGGTAA 1353949 36 100.0 30 .................................... CAAGTGCCAAAAGAATAATAAAATATAGAA 1353883 36 100.0 30 .................................... TGACTTCGCTAGCTGATGGCATGTATGGAG 1353817 36 100.0 30 .................................... AGACCCACAAATAGCACTTAAAGATGCAAT 1353751 36 100.0 30 .................................... AAGAAGCCCTTCTAGTTGTATCACCTTTCT 1353685 36 100.0 30 .................................... GGTAATAATTAAAAATATCAAACTCGAAGA 1353619 36 100.0 30 .................................... CTCTCCATTTCTGGTTTTTAAAATAGGCAC 1353553 36 100.0 30 .................................... ATAATATAAGTAAAGATAGCAGTAGAGAGA 1353487 36 100.0 30 .................................... TTTAACCCAGACTGGACGTAAGCGTTATTT 1353421 36 100.0 30 .................................... TACTTACGATGGCGAAGATTACAACTACAA 1353355 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTGGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAAATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //