Array 1 50365-51592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAD010000002.1 Streptococcus lutetiensis strain P430803 KS25.ct_NODE_2_length_225927_cov_406.174_ID_1448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50365 36 100.0 30 .................................... TCAATTTTTTTAGCAAATGTCATCTTATAA 50431 36 100.0 30 .................................... CAGCATTTCAGACCGTGTTCGCTTTAAAGA 50497 36 100.0 30 .................................... ATAACTTTTGCCATGTTATCACCTCACAAT 50563 36 100.0 30 .................................... ATTCGGAAGACCAGCAACTCGCCACCGCGG 50629 36 100.0 30 .................................... TTCATCTGCACCAGCTCAAGCGCCAGCAGT 50695 36 100.0 30 .................................... CACGTAAAGTATCAGCTTGACTGTGAGCGT 50761 36 100.0 30 .................................... CACGTAAAGTATCAGCTTGACTGTGAGCGT 50827 36 100.0 30 .................................... GACCATACGTTGTCGTTTCTGGTGGTATTA 50893 36 100.0 30 .................................... AGATATATTGAAAGTCAAATGAATCAATTA 50959 36 100.0 30 .................................... ATTTGGCAGCAATGCTGGAAAGTGTGTCAC 51025 36 100.0 30 .................................... ATTTTCTATTTTTTATGCGTGTTTCAAGTA 51091 36 100.0 30 .................................... CTGTTGCCAAAAAGAAAGGGAAAATAATGA 51157 36 100.0 30 .................................... AATTATCCATTTTCTAAAAATCAATCTTTT 51223 36 100.0 30 .................................... ACAATACTGACAAAGATAATGATCACGTTT 51289 36 100.0 30 .................................... TATACCACGACTTGTTTGTTTTGAAATCAC 51355 36 100.0 29 .................................... GATTACTATACCAGTAATTGGTGCGCAAG 51420 36 100.0 30 .................................... AAAGCGAAGCCAAGAACTACTGGATTGGCA 51486 36 100.0 29 .................................... CTTAATCTAATAAACTATAAAATTATCTA 51551 36 88.9 0 ....................T...AAA......... | A,C,TAA,T [51573,51580,51583,51587] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACTGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : CTGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 52196-52694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAD010000002.1 Streptococcus lutetiensis strain P430803 KS25.ct_NODE_2_length_225927_cov_406.174_ID_1448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 52196 36 100.0 30 .................................... TGCCTTACCTACGTTATGGACATACTAACT 52262 36 100.0 31 .................................... CTTTGGTCTATGGCGAATGAAAAGGCTTCGC 52329 36 100.0 30 .................................... TTCTTTATGTTATAATTAAGCATAGCCTTC 52395 36 97.2 30 ..............C..................... AAATATACGCTATAATATACTTGTAAGATA 52461 36 100.0 30 .................................... AAATATACGCTATAATATACTTGTAAGATA 52527 36 100.0 30 .................................... AAATATACGCTATAATATACTTGTAAGATA 52593 36 100.0 30 .................................... AAATATACGCTATAATATACTTGTAAGATA 52659 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAGG # Right flank : CTGTGGCTACTAAATATGAATACACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTAATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGTGGTAGCTGGTTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTAC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //