Array 1 84423-84817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWA01000008.1 Thalassospira xianhensis MCCC 1A02616 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 84423 28 100.0 33 ............................ GGTTACGACCTTCGCCAGATCGCCCACGGATTG 84484 28 100.0 33 ............................ AGATGACCTTGCCTGTCTGAAAGACCCGTCGCG 84545 28 100.0 33 ............................ CTTCGTTCGGTTTCTGAGCCTGTCCGCGATACC 84606 28 96.4 34 ...........................T TTTGGTTACTCGGTCGGTCGATATGAATGGCTTT 84668 28 78.6 33 ..........TATGT.....A....... TCACTACTGCCGTAGGAAAATGGGTATAGAGCG 84729 28 92.9 33 ......T......T.............. CCAGCCGCCTTCGGATATTCAGCTTGATGAAGA 84790 28 92.9 0 ............GG.............. | ========== ====== ====== ====== ============================ ================================== ================== 7 28 94.4 33 GTCTTCCCCACGCACGTGGGGGTACACC # Left flank : GATATTGCCTTTGGCACTGTTGCAACTCTTTCACCTGGTGATTCGCTAGAAAAGAAAGTGCGCAACCGGGCCGCTGCGTACTTAAGAGAGCACGATATTATTCCACAAATGATTGATAATATTAAGAAGTTTATGACATTAGAAACCGGGGCAACCTAATGATCACAATCGTAGTTCGCACGTTAGAGCCAAGATTTCACGGGTTTCTTTCATCAATTATGTTGGAAGTTTCTCAGGGCGTATTCGTGCAGCCATCAATGTCATCTAGCATCCGCGATACTGTGTGGCAAACTTTAGCCGATTGGTATGAAGAGACACGCAACGGATCAATCCTAATGTTTTGGCCCTCACGTAAACAAAACGGAAAACTTATGATACGAACTCTTGGAGAACCCAGTCGGGAGGTTGTAGATTTTGACGGTTTACTTCTGATTAAAAAATAGGCAAATTTGAAATTTCTATTGACACAATCAATTGTTTTCAATTAGTTACTAGCAAGG # Right flank : CTTTATGCCGACATTCGGGAGAACCGTATTTTCTGCTTCGACCGATATGAACTCACAAAAAGTGTGCCCGCTCACATCCTGTCGCTCAATACGCTGCCCTATTACAACACGGGTAATGGCAACTATATTGCAATCCGTGTTGTCAATCCGGCAGGCAAACCTGTCGATTACGAAATCTTTTTCAAAGTGACAAAAGTATCGAGAAGGCTATTACGTCTGTATGTTTCCAGCGCTAGCGTGTGTGATGTAACGTATCAAAGCCAGCAACCGGCACTGCGGAAGATCGGTTTCTTCATTATTGCCTACTCGGCAAAATCAGAAAAATCCATTATAGCCTAAAAATGAGAAAATCCCGCCGGATTAACCGACGGGGCTTCTCTTAACTAGGCTCCTTTATAGCCGCTCTTGGGCGGATAACTACAGCCTTGGCTGTAGTTGGAGGAGCGCATTGCTTTCGCAATCCCGTTCATACGCTCAATTTGAAACTCTGTTAGGCCTTT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 98724-98934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWA01000008.1 Thalassospira xianhensis MCCC 1A02616 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98724 28 100.0 33 ............................ GCAAAGGTTCATCATCTGACGGCAAACCTTTCA 98785 28 100.0 33 ............................ CTGGGCTGCCAGCTATGCCTCCTCCCGGTAGTT 98846 28 78.6 33 .T.......GT...CAC........... AGTCAGTTCGGGCATCCCTGCCCTTGCAGCAAC 98907 28 92.9 0 ........................TG.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GGCTTCCCCACGCATGTGGGGGTACACC # Left flank : TGAAGGCCTGAAGCTCATGCTTGATGATGTGGAAAAGCTGGGGCCTGATTCAGAGGTCTTTCAGCCCGCGATGCAGTGTTCTGACCCAGAAGCTACAGCATGGGCTTGGGCCGCAGGCATGCATCTTGGCTTAAAGCCGGAAATTATCATTGAAGATGATGCCTATGGCTCCTCCGGGGCAAATGTGCGAAGTCAGTTGCTTTCAAGTGAACTGGGTCGCCCTTACGGCCGGGTTACCGGTTACCTTGGCATCCATGGTTTGGCCCATGCAGGAATGACGTCTCTGCACAATCGGGGTGGAGCGGCGATGTTTCCTGAGATGAAGCGGTGGCGGCAGATTGACTGACCTGAATAACCGGATCAGGCCAACAAGGATTACCGATTGTGTTGACAAGGATAAATCTTAAGGCTAATTTGTCATCCCATACTTGATTAAATTCTAGGCATTTGTGTGGTCATAGAAATATAGATCGCGCGTTTACAAAGGTTTACATCTAAGG # Right flank : CTCTCGTAGCGTTTGCCGCATCATTTATTGACCTGAGTTTTCCCCGTGACTGCGGGGCACTGCGCATACCAGTACGAGTAACCCTTTTGTTTGGATAAAGAAAATGACCTGTTCCTTGAACCGAATCAAAGCCTGGTTGAAACAAACTGAAGCGGTCGACAATGAGCTTATCTCAAGTCACGTGTCGATGGGTCAGGGTGAAAACGTAGAAACTATCGAACTTCTCAGGAGTGATTTAGAGAAGTTAGTCGCCACATGCGCAGCCCTCCAGTCAGAAAATGACGAGTACGCCCGGTATATGGCTGAGGACAATAATCGTGCGGCGTTTCGCGGCTGGCAGATTATCAACGAAAAGGTTGCTGCGTTAGTAAAGGAACGTCGAGAAGGCACCCCGTCACAGGCTTAATAATCGCTGTGCCTCTTCCAACGCCTCTTGCGGCGGCACCCCATGCGCGTGCCCAAGAATGGAAAGAACCTCTTCGGCAACAAATATCCGATTT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTCCCCACGCATGTGGGGGTACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //