Array 1 189502-190057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000004.1 Clostridioides difficile strain 19.3 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 189502 29 100.0 36 ............................. TGCAAAAGGGCAGAGAGTAGTGACTCGATACTACAA 189567 29 100.0 37 ............................. TACATATACCATATATACCCCCCTGCAACGCTTCATC 189633 29 100.0 37 ............................. AATGTGATTAAAAAAGGACAAAAGTTGGTGATACCTA 189699 29 100.0 37 ............................. GCGAAAAAATGCTAATAGTAAAAAACTTACAAGTAAC 189765 29 100.0 36 ............................. TAACAGTATTAGGAATTATTACACCTATTTCAACAG 189830 29 100.0 37 ............................. TTTATATCTTCTTTTGTAACATTTTTTATAGTTATTT 189896 29 100.0 38 ............................. GTTGTAAATTGAAATAGCTTTTCTTATATTTTTATTTA 189963 29 100.0 37 ............................. GCTTCTCACAAATAGTTTCAACTACTTTTTCATATTT 190029 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTATATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATACCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTAAAGATATTTAAAAATAATATATTCATAATATTATAAAATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCCTAATAGTTGAAATATAAGGCATTGAGGGTATGTGATAAATGTTATCATTTGCACTACTCATGGTTCACTGCAAATTTGATAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTCCATATCCTTTAGTAGATACTTTTGTTGTTTTTTAATCTTTAGTAATTTGTTCTTGAGTGAACCGATTATTTTTTCTAAATTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACATGTATAATACAATTAATTCAGTTTCAATTGTCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTAGATAAACCAAAAATTTTAGCAAATATTATTAACACACGTCCCTTATTGCTCTTTCACCAGACTCTATTCTATTCATAACACTTATATTTATATTTGTTTTTTTAAACAATTCTTTTTGAGACCTACTCATATTTTCCCTAATATATTTAATCCTTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10979-10097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000056.1 Clostridioides difficile strain 19.3 contig_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10978 29 100.0 36 ............................. CAATATTATTATCTCATGGTTTTGCCAATAAAAAGT 10913 29 100.0 38 ............................. CAGTTAGGACATGATTTAGCATTTGATGCTATTTCCTT 10846 29 100.0 36 ............................. TTAGAATATCATCAAAAGAGTTATAAACATAATACT 10781 29 100.0 37 ............................. AGGGATGATTTAAAGACTTTATTTTCAGAGCAAACGG 10715 29 100.0 36 ............................. CTATTTGCAATAATACTATTATTTTGGATACACAAA 10650 29 100.0 37 ............................. TTAGAAAGATATAAATCAAAGCCTGTCTTAGTCCAAA 10584 29 100.0 37 ............................. TGGGCTAGGTTTTACTAAGACAAAGATACTAAAGTCA 10518 29 100.0 37 ............................. AAATCTACTCCAACAATAACATCCATGAGTGGGTCAA 10452 29 100.0 37 ............................. TTCTATTTAACTTCATAAGAATACTTTTCAAGTTCTA 10386 29 100.0 36 ............................. GCAGAAGAAACAAGTTTTAAAACGATAAAAAAATAA 10321 29 100.0 36 ............................. TATCATTAAAACGACGAGGAGAAAACTTTATTGAAC 10256 29 100.0 36 ............................. AGATATTGGACAAATTACATGAAAGTTACATGGTTA 10191 29 100.0 37 ............................. TTAAATTTATAGAAATTCTTATAGCATCAGTTGTTTC 10125 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGCTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAACTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACTGTATTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAACTACCAGATGCAGAATTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 29839-30760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000055.1 Clostridioides difficile strain 19.3 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 29839 29 75.9 203 T......TA....A..T.....C...T.. TCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG CC [29849] 30073 29 100.0 37 ............................. AAACTGGTTTAAGTTGGCTACTTTATAGCTTTTGCTA 30139 29 100.0 37 ............................. TAATATTTTGGAAATTTAAATCTAAATCTATCTCATA 30205 29 100.0 36 ............................. GATAAAATAATTGAATATGTAGCTTTCGATATGTGT 30270 29 100.0 37 ............................. AAGAGTTTTCTTAAACTAAGAATTGTTTTAGAATTTC 30336 29 100.0 38 ............................. TTAAATATTTTATTTGATGTATTATCTCCAAAAATATT 30403 29 100.0 36 ............................. CATATCAGCACTTCCAAGATTTTTATTTTCTGAAAT 30468 29 100.0 38 ............................. CTGTATATTTAGTAAATGTTTGTTCAAAGTTGGCAAAC 30535 29 100.0 36 ............................. TAATTTAGACGATACACAATTCCATTTCTTGTATTT 30600 29 100.0 37 ............................. AAAGTTAAATTTATTACATCTAATTCTGTCTCTTCAT 30666 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 30732 29 72.4 0 ......C.........AAT....AG..TA | ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 12 29 95.7 52 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TCGTTGTATTGACAATGCTCCTACGGAAGGAATTTGGGGAATTTTAAAGGTGGAAATGTACTATTTAAGGAAATTTGATACATATGAACAATTAGTTAAAATAATAGAGAATTATATATATTACTATAATAATTTTAGATATCAAAAGAGATTAAATTCTATGTCTCCACTTGAATTTAGGAAATATTTAAGTACAGAGATAGCATAATTTATTTTAAGTAGCTCTAAAAAAATTTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGGGCAGTATCAATAAATATATTGTCTAAATTTTTTTTAGGAACTAGTTGACTAGCCATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTAGTCATATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 140013-140435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000055.1 Clostridioides difficile strain 19.3 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 140013 29 100.0 37 ............................. TTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTA 140079 29 100.0 37 ............................. ATGTTATTACATAAAAATTCTTCATCTATAACTTTAA 140145 29 100.0 36 ............................. AAAATAAGGGTTTAATTTCCCTGGTGTCGAGGAATA 140210 29 100.0 36 ............................. TTTAAATGAAACTCTTGAAATAGTTGACGTAGTAGC 140275 29 100.0 36 ............................. TATATATTAGATGTCAATGTCAAGGATACAAAATTT 140340 29 96.6 38 .......................T..... CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 140407 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGTGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAAATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTCTTGTTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATACCTTATTGTAGCACCTATTACAACTTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATGATGAGAATGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 230203-230757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000055.1 Clostridioides difficile strain 19.3 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 230203 29 100.0 36 ............................. GGAACATACGGAAGGTCGTAAGCAACTCCAGACAAA 230268 29 100.0 35 ............................. TGCAAATTTATTACTTTTTTTATAAAGTTTATAAG 230332 29 100.0 37 ............................. GCTTGTTTGACTAAGTTAGTCCCCCAGCTTATGACAT 230398 29 100.0 36 ............................. CAATTCTTAAAAGATACTGCAATTATTAAAAATACT 230463 29 100.0 37 ............................. AATTGTTCTGGTGATCAACTTCAAAGTGTTATAAAGA 230529 29 100.0 37 ............................. TATTTACTATTTTCACAGTTTAAAGAAGTATAGTAAC 230595 29 100.0 38 ............................. ATCGCCTTCCAGATTACTTTTGTATATGAGGTCAGCAA 230662 29 100.0 38 ............................. TCAGTTTTTCGTTTGATTGGCTCTATCTTTAAAAAAGA 230729 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.9 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAAGTATATGATAGGTTTTTTATTAAGCATATTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTTACAAAATATGGCTTAACACTTGAAATCTAAGATGTTGAGGGTGTGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATACTGAAAAACACTTACTTTTATGGTAGGTGCTTTTTTATATTAAAATCTGTGTACTTAATTGAAATATTTGGTAAAATATGTAAGAATTGTATGATATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTACGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 231360-232181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000055.1 Clostridioides difficile strain 19.3 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 231360 29 100.0 37 ............................. CATTTCCAATTACATCACCTCTATATCTATTCTAAAG 231426 29 100.0 38 ............................. CTAACACTAACACTATTTTTATTAATATTTAACTTCAA 231493 29 100.0 37 ............................. AATGCAGAAAAATTTGAAAGTTGGGTATTTGATGAAG 231559 29 100.0 37 ............................. CTTAACGAAATACTTATTCAATTTGCTTATTAATACT 231625 29 100.0 37 ............................. TATCTTTAGCACTGTAATTTTTAGTGTCAGTTGTATC 231691 29 100.0 37 ............................. ACTCCAAAATTGAAGTTTATAAAATTGTAAGTATAAG 231757 29 100.0 37 ............................. ATGTTCAATTTTGCATTTGCACTTGTAGACCCTGTTG 231823 29 100.0 37 ............................. TTGGTTATAGCTCTGCTTGCATGAATTTCATTGCAAA 231889 29 100.0 37 ............................. TATTTTGTATGGGAAGTACCACGTGCAGAAGCTACAA 231955 29 100.0 37 ............................. ACTAAAGGAGTTTCTTTGTTCTTTATGCTCTACAACT 232021 29 100.0 37 ............................. AGATTTTATTATAGAGTAGAGGAAGGGCTTGTAAATG 232087 29 93.1 37 ...............T....T........ GAGATTTGTATGGAGGCTATAAAACAAAACGGATTAG 232153 29 79.3 0 ......T........T.....T.CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 97.9 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : TATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTACGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGTATGATAAGTGTTATCATTTGCACTATTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : CTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGATTGGGTAAAATAATTAGAAAAAATTGGGATAAGTTATTGACTTTTGAGTTCCAAAACTATATAATTTAATTATGGAACTCAAAAGTGAGGTGATAACATGAGTCCTAAAAAAATAGGAAGACCTGTTGTAGGAAGCCCTAAAACTAATGATATTAAGGTTAGAGTAGATGATGAAACTAATGAAAAATTAGATGAATACTGTAAAAAAAATAACCTTACAAAAGCAGAGGCTATAAGACAGGGAATCCATTTACTTTTAGAGAAATAACAAAATAGAGCATTCTCCCCGACCAAAGATTGAATGCTCTATTTCCAACAAAGAAGTTAGCACTTCTATATGAAATATTTTATCATATAGAGAAACTTCTTTCAAATCAATTTGAGGAGGAATTTATATGAAAACTAATTTAGAATTAATCAAATCAGAAAACTTTGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 233769-234124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000055.1 Clostridioides difficile strain 19.3 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 233769 29 93.1 37 .AG.......................... TTTGTATTTGTATCTACACTACCTTGAACCTCAACTT 233835 29 100.0 36 ............................. AAAGTATCTCTAAATCCTATTGCTTTTTCGGTTAGA 233900 29 96.6 36 ...............A............. CAAAATGATGCTTGTTATCAAAATAGGTTGTATTAT 233965 29 93.1 36 A...........................T TTCGGATACAGAATTGAAAACAAACATCTAGTAATT 234030 29 96.6 38 ............................T GTTGGTTCAATTTCCAAATGACTTAGACAGTGATTATG 234097 28 86.2 0 ....................-.CT....A | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.3 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CAGTTGGCTGTTTGTGAGATTATTAAAAAGATTGATTTAGAAGAAAATGAAGTAAAAGGAGTTTGGGAGACTAATGGAAGTTGGACTGGTACTGTAAATAAATATACAAAGAGTGTAATAGATAAAATAAGAAATTGGATAGAGGAAAATAATAGACCTACCAAGATACAAGGTGAGAAGAAGAATTATCATGTGGTTTATAAAATTGAGTAAATTTATCAGTTGTATTAAATAATTTAGTTTAGTTTTTAGGGGGATTAATACAATGTATGAGAATTTACTTGATAGTATAGATATTGAAAAGAGAAAAGAAGAATTTAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTATGAGAAAAAATTAGAGAAAAATAAGTAAATAATATGGATAAAGCACTTGGATATTTCACTGTTTCAAGTGCTTTGTATGTTAAAAAATGGTATAATATAGGGAA # Right flank : ATTAAAAATACTGAAAAACACTTACTCAGGTAGGTGTTTTTTTATTGAAAGGAGGTGATTATAATGTAAAAATTTTACTTATATAGTATAATATTCTTATAAAATTATGTAGGGGGTAATAATATTATGGGGTTATTTGGAGGTAAAGAACCATGTTGCATATGTGGAGGAAAGGGTAAAAATAAAGTTTTAGAAAATGAATATCTGTGCAATAATTGCTTTGTTGATTTTACAATATTCTCTAGTGAAAGATTAAAAACAACTAGTGCAATGCAAGTATTAGCAGACCATGAGGGAATAAGAAAGTTTATAAATTTTTCTAAGAAAAATAGAGAACTATTAGCAAAATTTGTTGAGACAAATAGAATTAATAAATTTATATCCATTGATAAAGATAACAACTTTATTAAAATATCAGATATTCGCAAAGGTGGAGATGTAATAGAAAGTGTATATGCAACTGATGAAATTATGCAATTTGAACTTTTGGAAGATGGAGA # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 366460-366753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFOH01000055.1 Clostridioides difficile strain 19.3 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 366460 29 100.0 37 ............................. AAATTTTTTATTGATTACGCTGAAAAAAACCATGTTA 366526 29 100.0 37 ............................. ATTATTACAGAGAAGGTTATTATTGATTTAACAAAGT 366592 29 100.0 37 ............................. TGAGTATTTTTATAGATGCATTTTTCAAAACTATCTA 366658 29 100.0 38 ............................. TTTATAACCTTTAATTACACCTCCCATATCACCACCAC 366725 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 99.3 38 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTGACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGCTTCTTTATCCATATCATATAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGTATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAACATTTTCTCCCCTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //