Array 1 108979-109862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKRI010000013.1 Cronobacter malonaticus strain MOD1_GK1518 cmalGK1518_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108979 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 109040 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 109101 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 109162 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 109223 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 109284 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 109345 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 109406 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 109467 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 109528 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 109589 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 109650 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 109711 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 109772 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 109833 29 93.1 0 ...........TT................ | G [109850] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136635-138374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKRI010000013.1 Cronobacter malonaticus strain MOD1_GK1518 cmalGK1518_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136635 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 136696 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 136757 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 136818 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 136879 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 136940 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 137001 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 137062 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 137123 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 137184 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 137245 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 137306 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 137367 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 137428 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 137489 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 137550 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 137611 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 137672 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 137733 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 137794 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 137855 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 137917 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 137979 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [137988] 138041 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 138102 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 138163 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 138224 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 138285 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 138346 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //