Array 1 6831-5339 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYIP01000002.1 Listeria monocytogenes strain N11-1255 NODE_2_length_456697_cov_57.9328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6830 36 100.0 30 .................................... TTTACGAAGTGCCGTTTATAGTCGAGATGG 6764 36 100.0 30 .................................... ATGCGTTTGGTACAGTACCTTGAACAACGT 6698 36 100.0 30 .................................... AGTCCAACAACCGCCTCCGTGTGTGTTTCT 6632 36 100.0 30 .................................... CTTTCATCAAGTGTATTTTTTGCGACAAGA 6566 36 100.0 30 .................................... ATCAATCGACAATATAAATACGCATCATCT 6500 36 100.0 30 .................................... TTTAGGGAAGCGCCCTTCTTCCCGTTGAAA 6434 36 100.0 30 .................................... CCGATAGTTTTTTAAAAGTAACTTTACATT 6368 36 100.0 30 .................................... GTATTTACAAAGTATCTATCCGAGTCCATA 6302 36 100.0 30 .................................... TGGCGATGCGTTGTTACCGATAGCTGAAAT 6236 36 100.0 30 .................................... ATATGACCGGTTTGATTCTGGTTACTGGAA 6170 36 100.0 30 .................................... CACGAGTATCCACACAATCACTATCCAAAT 6104 36 100.0 30 .................................... TTCTTTTCCTTTGATAACAGCTCTATAAGA 6038 36 100.0 30 .................................... TAAAAAAATACCAAGCGCAACACTCATTAA 5972 36 100.0 30 .................................... TTTAATTTCTTCCATCAGTCCAGCGGGAGC 5906 36 100.0 30 .................................... AGGTGGAGACTTCGGCTCTGGTTACTCATT 5840 36 100.0 31 .................................... CAAGACGGATGAGCTTGGCGACAATTTATCA 5773 36 100.0 30 .................................... ATATTCAAATGAATCAACTAATACTTTTTT 5707 36 100.0 30 .................................... TTTAGTTTATCAGTTTATCACAATGGAAGA 5641 36 100.0 30 .................................... AACTACAATCAGAACCCTATCGACTTAGAA 5575 36 100.0 31 .................................... CAAGACGGATGAGCTTGGCGACAATTTATCA 5508 36 100.0 30 .................................... ACAATAAGATTTTTGAAGGGGATATAGGCT 5442 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5376 36 77.8 0 ............CA.....C.....A.A....T.GA | A,T [5343,5348] ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAATTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTATATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCTCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGGGAATCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAATAATTAAAAAAGAAAATCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 44318-45065 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYIP01000001.1 Listeria monocytogenes strain N11-1255 NODE_1_length_953586_cov_54.6864, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 44318 29 100.0 37 ............................. ATCATCGCTCCAAGATGTAGCATAGTCTTCGCTATCA 44384 29 100.0 37 ............................. ACTCTACAATTTTACAGGCAAAGAACGCGAACAAACC 44450 29 100.0 36 ............................. CTTTATCATATGACGAATTTAATAAATCATGTCCTT 44515 29 100.0 36 ............................. CGAGATAAAGTATTAGTGGCCATTAATGATAGTTCG 44580 29 100.0 36 ............................. TTGTTCCCACAAAACGAAGGTAATATGGAAAGCGTC 44645 29 96.6 35 ................G............ ATTCATTTCTATATATTTTTTGGACTATAGTTTTA 44709 29 96.6 37 ................G............ AGCGGTGTAGACAAAATAACTACAATTAAATTTTCCG 44775 29 96.6 37 ................G............ AGAACAGGTGCTGGGTCAACTTGCCCTCCCATTTTTT 44841 29 96.6 35 ................G............ TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 44905 29 93.1 37 T...............A............ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 44971 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [44994] 45037 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 94.6 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATTGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 60198-61142 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYIP01000001.1 Listeria monocytogenes strain N11-1255 NODE_1_length_953586_cov_54.6864, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 60198 29 100.0 38 ............................. GAAAAAGTTGCATCTGGAACACTGACATTTGCTAGCTC 60265 29 100.0 35 ............................. CAAGCAGAGGGATTAGGAGAAATTCAAAACTATTG 60329 29 100.0 38 ............................. ACGTCAACACCTTGCGGAGTATTAGCCAATTTTATTGC 60396 29 100.0 34 ............................. TTTGCTCCTGTTTGAGACTTTCATGCTGGATTAA 60459 29 100.0 36 ............................. AGAAATCAGCCTCCGAGCATCTTTCAACGCAAATGA 60524 29 100.0 37 ............................. GTTATATCTTCTATTTGCGCCGTTTTTCCGTCATAAA 60590 29 100.0 36 ............................. TCGCTTGTGTATAAACACAAGTCTACCGCAACACCG 60655 29 100.0 37 ............................. CCATTATACGCCACATATACCCTGTGCATATCCACTA 60721 29 100.0 38 ............................. TGATTCACGACGTTATTTTCACCAGTCTTTAGTGTCAC 60788 29 96.6 37 .......T..................... CAATACCCGCTGGGTTTAGACCTCTAGCAGGTAATCA TG [60810] 60856 29 100.0 34 ............................. CTCACTGGGAAAATCGCTAAATATTTGTATCCTG 60919 29 96.6 35 ..........T.................. ATACTTAGACCTGCCGCCGATGCAAATACCGCAAA 60983 29 100.0 36 ............................. AGCTTTCGTCACGCGGATTTGAACCATGGATTGTCA 61048 29 100.0 36 ............................. AAGTTAGTTTCAAGGTGGATCGACTTCTTGAAATGG 61113 29 93.1 0 .......................A....C | C [61136] ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGATCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAATGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //