Array 1 1058030-1063884 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063691.1 Erwinia amylovora strain 32-10 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 1058030 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 1058091 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1058152 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 1058213 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 1058274 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 1058335 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 1058396 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 1058457 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 1058518 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 1058579 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 1058640 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 1058701 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 1058762 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 1058823 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 1058884 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 1058945 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 1059006 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 1059067 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 1059128 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 1059189 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 1059250 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 1059311 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 1059372 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 1059433 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 1059494 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 1059555 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 1059616 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 1059677 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 1059738 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 1059799 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 1059860 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 1059921 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 1059982 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 1060043 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 1060104 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 1060165 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 1060226 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 1060287 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 1060348 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 1060409 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 1060470 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 1060531 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 1060592 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 1060653 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 1060714 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 1060775 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 1060836 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 1060897 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 1060958 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 1061019 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 1061080 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 1061141 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 1061202 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 1061263 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 1061324 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 1061385 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 1061446 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 1061507 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 1061568 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 1061629 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 1061690 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1061751 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1061812 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1061873 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1061934 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1061995 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1062056 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 1062117 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 1062178 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 1062239 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 1062300 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 1062361 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 1062422 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 1062483 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 1062544 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 1062605 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 1062666 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 1062727 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 1062788 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 1062849 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 1062910 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 1062971 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 1063032 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 1063093 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 1063154 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 1063215 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 1063276 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 1063337 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 1063429 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 1063490 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1063551 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 1063612 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 1063673 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 1063734 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 1063795 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 1063856 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 96 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1072924-1075517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063691.1 Erwinia amylovora strain 32-10 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1072924 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 1072985 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 1073046 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 1073107 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 1073168 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 1073229 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 1073290 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 1073351 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 1073412 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 1073473 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 1073534 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 1073595 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 1073656 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 1073717 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1073778 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 1073839 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 1073900 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 1073961 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 1074022 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 1074084 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 1074145 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1074206 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 1074267 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 1074328 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 1074389 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 1074450 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 1074511 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1074572 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1074633 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1074694 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1074755 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1074816 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 1074878 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 1074939 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1075000 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 1075061 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 1075122 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 1075183 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 1075244 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1075305 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1075367 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 1075428 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 1075489 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : GCCAGAGGGGATTTAGCAATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACATACCGGTCAGGTTCATCGTAGATGATAATGTTTTTAGAAATGCAATCCTCCATATTGTAAAATAGTATCCATGGAGCGAAGAACCATCCACAAGAAAATACTATGACGGCGGCAATAGTAAAGTAACAGCGCCTCATGAGTGATAATCCCCTATAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1084822-1085150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063691.1 Erwinia amylovora strain 32-10 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1084822 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 1084882 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 1084942 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 1085002 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 1085062 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 1085123 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //