Array 1 23146-24436 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGY01000022.1 Lactobacillus helveticus strain IMAU30023 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 23146 36 100.0 30 .................................... TAATTCTTAATCCTATTGCACCGGATGCAG 23212 36 100.0 30 .................................... CTTTGAAACATATGCTATACACCCCTCAAG 23278 36 100.0 30 .................................... AGAACCTTTTCTACAGAAGCACAATCTGTC 23344 36 100.0 30 .................................... AGTGCATAGGTGAAATTAGTAAGCACAGAC 23410 36 100.0 30 .................................... GTGCGCCAAATCAAGCTGAATGGCGTGATG 23476 36 100.0 30 .................................... TTTCTACCATATTAGTGATTTAACAGCTAA 23542 36 100.0 30 .................................... AAAAGGTGTTGACAATTTAAACCCAACCGA 23608 36 100.0 30 .................................... CTGTTTAAGTGGTTATATCTATCTAATAAG 23674 36 100.0 30 .................................... GCTTTTTTCGACAGAAACTTCATACAGTGT 23740 36 100.0 30 .................................... CCAGCTTTTTTATATATCGTAGGGATTCAT 23806 36 100.0 30 .................................... TATCCTAACGTAGCAAAGTATGTGAAGGGT 23872 36 100.0 30 .................................... TAAGGTATGTCGTGAACTGATTAACAGGTA 23938 36 100.0 30 .................................... ATTTTTCGATTCTTGCCGCAACCGGTATGC 24004 36 100.0 30 .................................... CTGAAAAGACCATTCGAGGAATGAAATGTT 24070 36 100.0 30 .................................... AATTGAGTTAAAAGTAAAAGCATGGCTTGT 24136 36 100.0 30 .................................... TATTAATCGAATGCTTAGCTCTGCTAAAGG 24202 36 100.0 30 .................................... CCTTCATAATTTCTGCTAGATAAAAAACAA 24268 36 100.0 31 .................................... CTGTTTTTTTGATTTAAATACACCAACAATA 24335 36 100.0 30 .................................... GCTGACAATGCAACTGCTAAGGAAATCTAA 24401 36 91.7 0 ..............................C.A..A | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.6 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : AATTGAAAAATATATGCCGCATATTTTGAAAAGCTATATTCAGAAGTTAGATGAAGAAAATCGAAATAAGATATTTTCCGCGTATCATAATTTAGAGTCTTTATTACAGGATTCTTTACTGTTAGAAGATCTACCGTTAGAAATTGATTTTAATGAAGATTTGAAAAAGCTACTAAAAGCAGAAAACTTACATTTAGATGTTAAATTATTAAAGGAACCATATGTTATAATTGAATCGATTCTAAAGATTCATCAGATGTGTAAGATAGATTCAGTTCCTGTGATATGTAATGTCGCTAATTACTTAAATTCACAGCAATTACAAGAACTATCAAACTTAGTAAAACAAATGAATATGAAGCTCGTTTTAATAGAATTCACAGATAAGGATTTTCTGATTGTTCCTAAAAATGCTGAATTCTTCTATATTGACGAGGACCTTGTTGATTGGTATTGATCATCAGATGAGAAAAAGATGAGAAAAAGATTATAAAAAATCG # Right flank : ACACAAAATAAATTAGCTATTTACTGAGACTATATGTTCACAGACTTGTGTGATTAAAAAATTGGTAGGCTCTATTTCAGAATGATTATGTAGTAATACGTAATCATTCTTTTGGCTCTTTGTCAAATCCTGTTGATAGAGAGTAAATGAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCCCAATTTGATCTTGGCAGTTGATTAACGATTTGAGCTCATGCGTATTGCCAGTTTCAACGGCTTGAACAAAGCTTTGCATCAGGTTATATGAATTCTCTAAAGCAGTGCTGGTGTTAATGCCTTCTGTAACTACTTGTGCTTGAGTTAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 9520-9368 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGY01000016.1 Lactobacillus helveticus strain IMAU30023 Scaffold16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9519 29 100.0 32 ............................. TACTTAAAATTATGCACTACTGGAGGCATTTA 9458 29 100.0 32 ............................. TGTCTATTTTTTCTTTTTGCGCCTCCGTGGCT G [9441] 9396 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 90.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CCCTATCTGGGTTTACAAAATATATCCTCGTTATCCGATGTATAAAACAAAATATGTAAAAGCATATAAATTAAAGCCTGGAGACACACCCATAGTAAGACATCGTGGTGTTGACTGGGGTTGGACCGTTGGAAAGTCTTATCGTTATTGTATTTTAAAAGACAGCTTTTCTTGGTTTGATGGCTATTCAAAATATAAATGGGTTGACCAAGGCTTACTTGATGGCTCTATGAAAGATGAGCATTTTGCCTACAAATTCACTTGGAAACAGTATTGTCAATTAATTAAAGCCGGTATCTACACAACAGTACATCCAAAGAAATTATGGAACTCCAAAATTAAGAAGATGATTGAAAGATGGAAGCCTGAGACTGATAACAGCTAATAAAAAAGCCCGCCTACTCAAACTAGCAGACGGGTTGTATTTAACACATTAAAAGAACACAGGTTCACTAAAAAGGAGGTGAACACAATGCCAAAAAGAAAAAATACCGCTATTA # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCACATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCAATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCACCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //