Array 1 486335-487228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVV010000002.1 Listeria innocua strain UCDL085 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 486335 36 100.0 30 .................................... GAAGGCTGTTATTGAACTGGCGACTACTTT 486401 36 100.0 30 .................................... AGGCGACACAAGCGTTAACACAGGACTCGA 486467 36 100.0 30 .................................... AAAAATATCAGCGCCGACAATGTTCTGGCT 486533 36 100.0 30 .................................... ATATTCATTCACCCATTCATATGGATTGCG 486599 36 100.0 30 .................................... ATTCAGTTAACAACTCAATTCCATAAAATA 486665 36 100.0 30 .................................... ACAACAATAAGCTAACAGGGGAAAACAACA 486731 36 100.0 30 .................................... TCTTGACACAGATTACTTATTAACTACGTT 486797 36 100.0 31 .................................... CCGCGGCAATCTCGGCTATTTTTGGAAGTCA 486864 36 100.0 30 .................................... AATTAAGACAAGATTCAAGCTATATTGTAG 486930 36 100.0 30 .................................... TCAATGCAGAGGAAAAAGTAAAAGAATTGG 486996 36 100.0 30 .................................... CGTGATCGTATCACGTAAAAACAACGTAGG 487062 36 100.0 30 .................................... TCTGAGCTTTACGAAAACGATGGTCAACTT 487128 36 100.0 30 .................................... ACAAGTGGAAACATTAGTATCTATGCAATA 487194 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTAGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTAGAAAAAAAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACAAATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAACTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTTCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCGATACTCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAACCATAGAAAATTTAACCCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 302544-302702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVV010000001.1 Listeria innocua strain UCDL085 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 302544 29 100.0 34 ............................. AAGGTTGAAGCCCATTCATCAAATGAGCTTATAG 302607 29 100.0 38 ............................. TTTATTGCAAATAAAGGTATTGATTGAGCTATAACTGA 302674 29 75.9 0 ............C..CA......AA..GC | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 92.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATCGGACGAATCTTAGGTCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCGGAGTTTAGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : CCCAATATATAATCTTTGCTCACATTTAAAAATCACATTTTCAATTTATATCCATTAAAATATTGCTTTTACCAACTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAAATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGG # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //