Array 1 162291-161712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVS01000002.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N31846 N31846_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162290 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 162229 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 162168 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 162107 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 162046 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 161985 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 161924 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 161863 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 161802 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 161741 29 96.6 0 ............T................ | A [161714] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1311-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVS01000006.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N31846 N31846_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1310 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1249 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 1188 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 1127 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 1066 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 1005 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 944 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 883 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 822 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 761 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 700 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 639 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 578 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 517 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 456 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 395 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 334 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 273 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 212 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 151 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 90 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //