Array 1 18922-18028 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_APSJ01000105.1 Neisseria meningitidis 96060 gnm96060.contig.104, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     18921	    36	  94.4	    30	........G...A.......................	TTTTTGTATCCATTCCCAGCCGGAAATTAA	
     18855	    36	 100.0	    30	....................................	CTTTAACTTTGACCGTGTGCAATCCAGTTA	
     18789	    36	 100.0	    30	....................................	CTGACCACACCTATCCGCCAGTGCTTATGC	
     18723	    36	 100.0	    30	....................................	AAGCCGGTTTATGGCAATTCTGCCGCGTCC	
     18657	    36	 100.0	    30	....................................	ATGCCTTTTTTTGTACTGTTGTTTGAACGA	
     18591	    36	 100.0	    30	....................................	AAATTCGTTTCAGATAGCAAACGCGGTGGT	
     18525	    36	 100.0	    30	....................................	AGTATTCGTCGATGATGGAAACTCGAGCAT	
     18459	    36	 100.0	    30	....................................	TTGCGCATGATGGCAACGATAATTACCATC	
     18393	    36	 100.0	    30	....................................	TACCCACGGCGGAAACCATTGCCACAAAAC	
     18327	    36	 100.0	    30	....................................	TCATACCCAAATCATCGGCATCCTGTTGGT	
     18261	    36	 100.0	    30	....................................	TCTTAAATAAGAGAGTCGCACATAATATTT	
     18195	    36	 100.0	    30	....................................	ATCAGAAGATAACGGAAAAACTGTTCATGA	
     18129	    36	 100.0	    30	....................................	TTTTAAATTATTACTTGATTGAAATTTAAT	
     18063	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.6	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : NA
//