Array 1 232-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814099.1 Lactobacillus sp. HMSC073B09 Scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 231 36 83.3 30 NNNNNN.............................. TCAAATGCTTTCAGAGACGATGAATCGTCA 165 36 100.0 30 .................................... TCAATAACTTCGAATCCTTCATCGGTTGGC 99 36 100.0 30 .................................... GCATTCAGCGTTGGGACAATCCTTCCAGAA 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : AGATCAATCAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACCGGCACGCTATTCCATCCGATTAGCTACTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAGGTGTACTGCTTAGCTGACTCCCACGTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAGTTGATTGAGGCGCGGATGTACATTCCTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCCGTTTTGGTTGCAAAACGAACCGATTACGGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : G # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 622-388 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814099.1 Lactobacillus sp. HMSC073B09 Scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 621 36 88.9 30 NNNN................................ CGGCACGCTATTCCATCCGATTAGCTACTT 555 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 489 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 423 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GGTAGATGTCAGATCAATCAGTTCAAGAACTAATGTGCCGGTGGGAGCAATGGTGTTATCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTAATTCGCAGCTAAAACGTGTCACCGAGCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAACTATCTAACACGCTATACACAGAATGGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGATTTGCGAGATGTCGCGATAAGAAGTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCCGTTTTGGTTGCAAAACGAACCGATTACGGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGATGTCAGATCAATCAGTTCAAGAACTCAAATGCTTTCAGAGACGATGAATCGTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCAATAACTTCGAATCCTTCATCGGTTGGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGCATTCAGCGTTGGGACAATCCTTCCAGAAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 1006-712 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814099.1 Lactobacillus sp. HMSC073B09 Scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1005 30 83.3 30 ------.............................. TAATGTGCCGGTGGGAGCAATGGTGTTATC 945 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 879 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 813 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 747 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 93.3 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACCGGCACGCTATTCCATCCGATTAGCTACTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAAGGTGTACTGCTTAGCTGACTCCCACGTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACAGTTGATTGAGGCGCGGATGTACATTCCTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACCCGTTTTGGTTGCAAAACGAACCGATTACGGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGATGTCAGAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 63-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814124.1 Lactobacillus sp. HMSC073B09 Scaffold131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 63 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 131 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 197 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 263 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 329 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 5 36 100.0 31 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CAGGTAGATGTCAGATCAATCAGTTCAAGAACTCGCTGACATTGACCATCAACGGCGCCGAGG # Right flank : AAGTTCGGCCTCAACGGTGTACCACTTTCCGTCTCAGGTAGATGTCAGATCAATCAGTTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 41030-41197 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814149.1 Lactobacillus sp. HMSC073B09 Scaffold218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41030 36 100.0 30 .................................... TACAAGGATGGCGGCAAGGTTTGGCAAGAC 41096 36 100.0 30 .................................... ACTGATCAGGAACAAGCAGTCAATGAGATG 41162 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTGATTGATCTGACATCTACCTGAGACCAAGCGGTGGGCAAACTCACTTCGTCATCAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACACACAAGACGTGGCAATTTAGTGACCGTCAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCTGTGATCCGCGGTTGTGATCGCTAACGCTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCTCTTTTTCGGCTTGATTGATATGTTGCTTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACACCAATCTGTGGCTGTGCCTGGTTCTTGTAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGGAGGCCATAACATGGCAAATGAATTAAAAGTTCTTGAACTGA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 41786-41354 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814149.1 Lactobacillus sp. HMSC073B09 Scaffold218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41785 36 100.0 30 .................................... TTAACCACTATAATTGTAGTGCCAGCCGCT 41719 36 100.0 30 .................................... TTTTAATTCATTTGCCATGTTATGGCCTCC 41653 36 100.0 30 .................................... TACAAGAACCAGGCACAGCCACAGATTGGT 41587 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAGAG 41521 36 100.0 30 .................................... AGCGTTAGCGATCACAACCGCGGATCACAG 41455 36 100.0 30 .................................... TGACGGTCACTAAATTGCCACGTCTTGTGT 41389 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : AGGCCTTGCTGGCACATCTGCAACAAGACTATACGCAGGCATACCGGTGCATGGAAGATGTGGTTAAGTTTATGCAGCAAAAATTACCCGGACCGATTTCAAAAAACGAACAAATTTATCTAACCCTCCACATCGCCCGTTTAGCCAAGAGTCAAGGACAAAGTTTAAAAAGTAGTTGACGAACGCTAATCCATCAGATAAGATGGTGATGTTGAAAGCGAATACATTTTAATTGGGCTTGTAACTATTGAATTAGGCAAAACCAGAAAGATACGACTTGTGTGCACCACAAGTCATGTCTTTCTGGCTTTTTTTATGTGAGCGCGAGCCGGCGCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTAGATGTCAGATCAATCAGTTCAAGAACTAACAGCACCGGCGAGCATTTACATCTGGG # Right flank : TGATGACGAAGTGAGTTTGCCCACCGCTTGGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTGATTGATCTGACATCTACCTGAGACCATCTCATTGACTGCTTGTTCCTGATCAGTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGTCTTGCCAAACCTTGCCGCCATCCTTGTAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCGGTGTTTTCACACAGCCTCTTAATCAATCAGTTCTCGGCTATCCATAAAATCTCTGTCAATATAGATATACTGGCACTTCTCAAAAAACTTTCTGCGTTCGACATCTGAAAATTCAATGAGAAGTAATTCCAACGATGTGTTCTTAACCTGATCTAACAGCTTGCTCAGACTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //