Array 1 367350-368720 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYQC01000001.1 Salmonella enterica strain BCW_4844 NODE_1_length_492368_cov_4.11543, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 367350 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 367411 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 367472 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 367533 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 367594 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 367655 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 367716 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 367777 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 367838 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 367899 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 367960 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 368021 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 368082 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 368143 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 368205 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 368266 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 368327 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 368388 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 368449 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 368510 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 368571 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 368632 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 368693 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384853-385963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYQC01000001.1 Salmonella enterica strain BCW_4844 NODE_1_length_492368_cov_4.11543, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 384853 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 384914 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 384976 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 385037 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 385098 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 385159 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 385220 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 385282 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 385385 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 385446 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 385507 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 385568 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 385629 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 385690 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 385751 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 385812 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 385873 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 385934 29 96.6 0 A............................ | A [385960] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //