Array 1 1150-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIK01000120.1 Escherichia coli strain LVNMSB179 NODE_826_length_127233_cov_251.668488, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1149 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 1088 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1027 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 966 29 100.0 38 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATNNNNNNNN 899 29 93.1 32 NN........................... TTACCGAGCGTCACGAAACAGACAACACCAGG 838 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 777 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 716 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 655 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 594 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 533 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 472 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 411 29 100.0 36 ............................. GCCCAGAATCTCTTTTAGCGCAACGATANNNNNNNN 346 29 93.1 32 NN........................... GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 285 29 100.0 40 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAANNNNNNNNNN 216 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 155 29 100.0 36 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTNNNNNNNN 90 29 93.1 32 NN........................... TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 19 29 98.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : G # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27316-26852 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIK01000120.1 Escherichia coli strain LVNMSB179 NODE_826_length_127233_cov_251.668488, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 27315 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 27254 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 27193 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 27132 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 27071 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 27010 29 100.0 40 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTNNNNNNNNN 26941 29 96.6 32 N............................ CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 26880 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 99.2 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //