Array 1 106280-106448 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802533.1 Streptococcus sp. HMSC061D01 Scaffold239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 106280 36 100.0 30 .................................... ATATCATTCCTCTAAAAGTAAAAGATGTAA 106346 36 100.0 31 .................................... GGGAACTATCTATGTAGATACTTACTCTAAT 106413 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 94.4 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCCGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATATGTCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTATCGGAAAAGAGTGGAACAAGCATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGACATTCTTTATTGTCTCGTTCTATTGCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATCCGAGAAGAGATTAGTAAGATTTCTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGTTACTGGAATGAGACTAGGCGAAAGCCTGTTTTAGAGCTGTGCTGTTT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 107251-107418 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802533.1 Streptococcus sp. HMSC061D01 Scaffold239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 107251 36 100.0 30 .................................... AAGATAAAGAACTAAAAAAAGCTATGAATT 107317 36 100.0 30 .................................... CGCGCTTTTTTGATATAATCATCTCAAAGG 107383 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGTTACTGGAATGAGACTAGGCGAAAGCCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGATTTGGAAATCTTAGCAAAAATAGAAAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGGTAGTGGAGATAAGTTTACTGTATCTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGATAAAAAACGTAGTCGATTTAAAGATT # Right flank : CTCCGCGCTGTTCTAAGAATCGAATTTGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAGTTAGAAAAGGTTAACGTGTTATTGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAAACTGCTGTGATATTCAGTATCTTCGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTATTATCAATTTCCGAGAGCAGATAGCCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 107573-107806 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802533.1 Streptococcus sp. HMSC061D01 Scaffold239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 107573 36 88.9 30 NNNN................................ TAGTTAGAAAAGGTTAACGTGTTATTGTTT 107639 36 100.0 30 .................................... TAAACTGCTGTGATATTCAGTATCTTCGTT 107705 36 100.0 30 .................................... CTATTATCAATTTCCGAGAGCAGATAGCCT 107771 36 80.6 0 .............................NNNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 92.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGATAAAAAACGTAGTCGATTTAAAGATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGATAAAGAACTAAAAAAAGCTATGAATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGCGCTTTTTTGATATAATCATCTCAAAGGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCGCGCTGTTCTAAGAATCGAATTTGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTCCCGTTTCCTAAACCGCTAAATAGTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCACGAAACAACCTGCAGACAAAATAGAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCACAAGGTAGCTTAAAACGTAGGCATTGGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGCACGACCGCATGGAACGACAACGGAAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCTTATTTGCTAGATTCCATTTACTACCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 107961-108194 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802533.1 Streptococcus sp. HMSC061D01 Scaffold239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 107961 36 100.0 30 .................................... TCACGAAACAACCTGCAGACAAAATAGAAA 108027 36 100.0 30 .................................... CACAAGGTAGCTTAAAACGTAGGCATTGGT 108093 36 100.0 30 .................................... AGCACGACCGCATGGAACGACAACGGAAAT 108159 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGCTGTTTCGAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAGTTAGAAAAGGTTAACGTGTTATTGTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAAACTGCTGTGATATTCAGTATCTTCGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTATTATCAATTTCCGAGAGCAGATAGCCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTCCCGTTTCCTAAACCGCTAAATAGTGA # Right flank : CATCTTATTTGCTAGATTCCATTTACTACCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGACTGCGATTGAGATGCTTGTTCTAGCTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGCCGGCCAACTTTACAAATACAGTTAATGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAAGCGATTGAATCGATTCTCTTAATTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 5 108418-108585 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV802533.1 Streptococcus sp. HMSC061D01 Scaffold239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 108418 36 100.0 30 .................................... TGCCGGCCAACTTTACAAATACAGTTAATG 108484 36 100.0 30 .................................... ACAAGCGATTGAATCGATTCTCTTAATTTA 108550 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGTTCCAAAACATTCCCGTTTCCTAAACCGCTAAATAGTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCACGAAACAACCTGCAGACAAAATAGAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCACAAGGTAGCTTAAAACGTAGGCATTGGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGCACGACCGCATGGAACGACAACGGAAATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCTTATTTGCTAGATTCCATTTACTACCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGACTGCGATTGAGATGCTTGTTCTAGCTGT # Right flank : CACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTATTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGCCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTGCAGTGGGAAGTCAACAATTGCCTCCCTTCTTACTCAGCAGTATGGGCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGCTGAGACATCCAGAGGAGATGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //