Array 1 944744-946113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017727.1 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 strain SGSC 2206 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 944744 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 944805 29 100.0 32 ............................. GTGCAGCGCTACTACGCACATAAATACGGAAA 944866 29 100.0 32 ............................. TTTTTAGTACGCGCATGGAATAAGGAACTTAA 944927 29 100.0 32 ............................. ATGAGCAGCGTAACGCTCAAAGTGCTTTTGAG 944988 29 100.0 32 ............................. GCGCTTAAAGACTGGCAGTTTGTCACCGGCGC 945049 29 100.0 32 ............................. GAAACGATCACGACTACCCCCGAGGCGCTACG 945110 29 100.0 32 ............................. CGCGTTTAGATCTGTGGGCCCGCTGGATTGCT 945171 29 100.0 32 ............................. GACAAAGCCGTCACCTTTGACCAGCACGCCCC 945232 29 100.0 32 ............................. CCATATAGCCCCCCTCTTATATGGGGTATGAA 945293 29 100.0 32 ............................. GTTGCGCCTGGATTTTTAGTGACGAACTGCGC 945354 29 100.0 32 ............................. GTTAAATTTACATCAGGTCTGGGGGCTTACTA 945415 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 945476 29 100.0 32 ............................. CGGGTCCGAAATGCTCGCCGCGTCTAGTTCAC 945537 29 100.0 32 ............................. GGCGCGCCTGCGCCCTCTGGGACTCGTGTCAA 945598 29 100.0 32 ............................. CGATGGGCGGTTAACTGGTCCTGTGCGGATAT 945659 29 100.0 32 ............................. CCTGCTTCCGCTTCAATAACTTCCTCATCATC 945720 29 100.0 32 ............................. ATCCCGTTTAGCTTACGGATGACCTTTAGCAT 945781 29 100.0 32 ............................. TTAATGAATCAAATCCCGTCCAGTCGTACTGC 945842 29 100.0 32 ............................. GTGTACGGTCTACTTAAAGCTGGAGAGGTAGA 945903 29 100.0 32 ............................. GGCCGCATATTCTTCATCAGTGATGTACCGCT 945964 29 100.0 32 ............................. GCTTCATTCAGTCAACCAAACGTCTCTCAGGG 946025 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 946086 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATAAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGCTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCAATATTGCGCGCGAACGTTATGCGGCAATAACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGTGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 962808-965338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017727.1 Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 strain SGSC 2206 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 962808 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 962869 29 100.0 32 ............................. CACTACAATTAACTCTTTATTGATATCTTTGT 962930 29 100.0 32 ............................. AGAAATAACTGATGCCGTCGCGGAACTAATTG 962991 29 100.0 32 ............................. TTACCCATGACGTAACTTATGACTGCCCATTA 963052 29 100.0 32 ............................. CCGGTTGGTGAGGTGCGCCTGAATCCAGAGCG 963113 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGTG 963174 29 100.0 32 ............................. CGATACCCACAAAGTTAAAGCGCTCACTTTTT 963235 29 100.0 32 ............................. ATTTGGAAAAACGCAAGAGCGAACTGAAATCA 963296 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 963357 29 100.0 32 ............................. CGCCAGCACGTGCACAATAGAGCCGCCTTTAC 963418 29 100.0 32 ............................. GAAATGTTTGCTCAGAAAATTAGGGCTAAGGA 963479 29 100.0 32 ............................. GCTCCCGCTGACGATAACCTGATATTCGTCGT 963540 29 100.0 32 ............................. CGAACAGCTCGCTGCAACCGAAACCCCGCCCA 963601 29 100.0 32 ............................. ACCAGGTTATTTATACAAGCCTGCTGGCTGAT 963662 29 100.0 32 ............................. GCTACCATCATAACAACACATTTTGCTTCTGG 963723 29 100.0 32 ............................. GCCAGGGTTTCAGGATTTCGGATATTGCTGAC 963784 29 100.0 32 ............................. TGTCGATCCAATGGCTAGGGTTAAACAGATAA 963845 29 100.0 32 ............................. AAACGAAAAGAAGGAGCTGCGGCATGAAAACA 963906 29 100.0 32 ............................. CGCTACGGCCTTGAGTGCGCTGCTGATAAACG 963967 29 100.0 32 ............................. AATGTCATCCTCAGTAGGCGTGGTTGAGGCTG 964028 29 100.0 32 ............................. CACAATCATTTTTGCTCTATGCCCCGGTTGGC 964089 29 100.0 32 ............................. CTGAATTGCCGCATCCAGGCGATCCGACCATG 964150 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 964211 29 100.0 32 ............................. CGCTGGCACAGGGTGAGATTGCGAACCTGAAT 964272 29 100.0 32 ............................. AACACCTCAAAACAGATCCGCCATTTGAGGAC 964333 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 964394 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 964455 29 100.0 32 ............................. AGCAAAAGGTTTACAATGATGAATATAACAAA 964516 29 100.0 32 ............................. GATTATTCGATCCACACGTTAACACTGGCTGA 964577 29 100.0 32 ............................. AGTTTTCGTTTACACACACGTCGCCAGCCACG 964638 29 100.0 32 ............................. TCGACTGCAGGCGTTCCATTTTCTCTTTGTTG 964699 29 100.0 32 ............................. CCGGGATGAATTCTGGCAGAGTGTCGATATTT 964760 29 100.0 32 ............................. TACGCCACCGGAAACTATTTGCAATTTCGCCG 964821 29 100.0 32 ............................. TCGTATGAAGGCGATGCGTAAGAAGCTGAACC 964882 29 100.0 32 ............................. ACGGGTCTGATCTGAACGCTGTAACAGGGGAT 964943 29 100.0 32 ............................. CCTTTATAAAATTGGGTGATGGCGTTAAAGAA 965004 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 965065 29 93.1 32 .............T.............T. CGGCGCCCGCCCCGAACCGGCGCTGGCTAGGA 965126 29 100.0 32 ............................. GCTGGAGTGTTACGCCCTGACTCATAATTTGA 965187 29 96.6 32 ................T............ AAGATAACTCCTGTCTTTCCATCATTCGAAGC 965248 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 965309 29 93.1 0 A...........T................ | A [965335] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGTCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //