Array 1 11591-11772 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828354.1 Staphylococcus sp. HMSC057G10 Scaffold336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 11591 37 100.0 36 ..................................... GTTTCTAAATCAATGTATTTTATTATATCTTTTCTT 11664 37 100.0 35 ..................................... TTATATTTATCTAAAATGCTCATTTAAAAAACTCC 11736 37 89.2 0 .................................NNNN | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 96.4 36 TGATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : GTCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTACCCCGAATAACAGGGGACGAGAATATTAGTACCGTCATGATCGTGTGTATTAATTTCTAAATGATCGATAACTACCCCGAATAACAGGGGACGAGAATTATACTATTTACATAATTTTTTATGTGTCTGTCTACGATCGATAACTACCCCGAATAACAGGGGACGAGAATAATTTTCTAATTCTATAAGTTCATTAATTCCGATGATCGATAACTACCCCGAATAACAGGGGACGAGAATACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTGGATCGATAACTACCCCGAATAACAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 11939-12116 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828354.1 Staphylococcus sp. HMSC057G10 Scaffold336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 11939 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 12011 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 12081 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 36 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCTGATCGATAACTACCCCGAATAACAGGGGACGAGAATGTTTCTAAATCAATGTATTTTATTATATCTTTTCTTTGATCGATAACTACCCCGAATAACAGGGGACGAGAATTTATATTTATCTAAAATGCTCATTTAAAAAACTCCTGATCGATAACTACCCCGAATAACAGGGGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTACCCCGAATAACAGGGGACGAGAATATTAGTACCGTCATGATCGTGTGTATTAATTTCTAAAT # Right flank : TACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTGGATCGATAACTACCCCGAATAACAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATAACTACCCCGAATAACAGGGGACGAGAATCTTAAAATCTAATTGCATTGTTATCAATTCCTTTAGATCGATAACTACCCCGAATAACAGGGGACGAGAATTAGACCATTTACCTCATTATATTTATAGTCTTTATTAGATCGATAACTACCCCGAATAACAGGGGACGAGAATATAAACCCGTTCAATTCGTTATCTTTAAATTCTTGGATCGATAACTACCCCGAATAACAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 12278-12531 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828354.1 Staphylococcus sp. HMSC057G10 Scaffold336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================== ================== 12278 39 84.6 32 NNNNNN................................. CTTAAAATCTAATTGCATTGTTATCAATTCCT 12349 39 100.0 34 ....................................... TAGACCATTTACCTCATTATATTTATAGTCTTTA 12422 39 100.0 32 ....................................... ATAAACCCGTTCAATTCGTTATCTTTAAATTC 12493 39 84.6 0 ..G...............................NNNNN | ========== ====== ====== ====== ======================================= ================================== ================== 4 39 92.3 33 TTAGATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTACCCCGAATAACAGGGGACGAGAATATTAGTACCGTCATGATCGTGTGTATTAATTTCTAAATGATCGATAACTACCCCGAATAACAGGGGACGAGAATTATACTATTTACATAATTTTTTATGTGTCTGTCTACGATCGATAACTACCCCGAATAACAGGGGACGAGAATAATTTTCTAATTCTATAAGTTCATTAATTCCGATGATCGATAACTACCCCGAATAACAGGGGACGAGAATACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTGGATCGATAACTACCCCGAATAACAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTACCCCGAATAACAGGGGACGAGAATTCTGTAATGTATTCATTTAATGTAATCATAATTTTTTCGATCGATAACTACCCCGAATAACAGGGGACGAGAATTTTTCTTTAACTGTTTTTACTGCCCATTTAATAGTGATCGATAACTACCCCGAATAACAGGGGACGAGAATTAGAATGTTATTATCTAAGTGGTCGATGTATTCCGATCGATAACTACCCCGAATAACAGGGGACGAGAACTCATCTTTCATGTCACTGATTAATTCATTTGTAGATCGATAACTACCCCGAATAACAGGGGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAGATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 12697-12874 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828354.1 Staphylococcus sp. HMSC057G10 Scaffold336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 12697 37 100.0 34 ..................................... TTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 12768 37 100.0 33 ..................................... AGAATGTTATTATCTAAGTGGTCGATGTATTCC 12838 37 97.3 0 ...................................C. | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 99.1 34 GATCGATAACTACCCCGAATAACAGGGGACGAGAATT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATAACTACCCCGAATAACAGGGGACGAGAATCTTAAAATCTAATTGCATTGTTATCAATTCCTTTAGATCGATAACTACCCCGAATAACAGGGGACGAGAATTAGACCATTTACCTCATTATATTTATAGTCTTTATTAGATCGATAACTACCCCGAATAACAGGGGACGAGAATATAAACCCGTTCAATTCGTTATCTTTAAATTCTTGGATCGATAACTACCCCGAATAACAGGGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTACCCCGAATAACAGGGGACGAGAATTCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC # Right flank : TCATCTTTCATGTCACTGATTAATTCATTTGTAGATCGATAACTACCCCGAATAACAGGGGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTACCCCGAATAACAGGGGACGAGAATAAGTTAACGGCATTACCTAATAAAAATATTTTAGGGATCGATAACTACCCCGAATAACAGGGGACGAGAACGGTAATAGTTGCTCAATAGGTAATAAAACGTCGGTGATCGATAACTATCCCGAATAACAGGGGACAGAGTGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 22174-21935 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828354.1 Staphylococcus sp. HMSC057G10 Scaffold336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 22173 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 22104 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 22030 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [22022] 21958 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //