Array 1 6653-7277 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXTY01000001.1 Staphylococcus simulans strain SNUC 1346 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6653 36 100.0 29 .................................... TGTTTAATAAATAATAAAACGACGATTAA 6718 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 6784 36 100.0 29 .................................... CAATTAAATTATAAAAAAGGGCAGAAAAA 6849 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 6915 36 100.0 30 .................................... CAAAGCAAGAATTAAAGGAGAAAAACATCA 6981 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 7047 36 100.0 29 .................................... TTTAATAACTATCGTTTAATAACTATCGT 7112 36 100.0 29 .................................... CTTTACGTGCTTTTCTCCACGCACACATC 7177 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 7242 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.9 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAGTTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGTTGGTTTTGTTATTTCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAAAAAATATCTGCAGACTCTAAATATGTTTAGTATTATTGTTACGAGTCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAAAAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : AAGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 190994-192080 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXTY01000006.1 Staphylococcus simulans strain SNUC 1346 contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 190994 36 100.0 30 .................................... GTGAATCTTTATCATCTGATGAATCACCGC 191060 36 100.0 30 .................................... AATCTTTGTCAGTCATCTGAAATCCTCCTT 191126 36 100.0 30 .................................... ATAAATATTTTGTATTGTTAAACGATAAAG 191192 36 100.0 30 .................................... TACTGGGGTGAACCAGTAGAAGCGTTGAGA 191258 36 100.0 30 .................................... TTATGGCGTTTTGTGAAACAGTGCCGAATG 191324 36 100.0 30 .................................... AAACCTAATTCTTTTCTGTACTCATCAGCT 191390 36 100.0 29 .................................... ACATTATCGCAGTATGTTAGCTGACGAGC 191455 36 100.0 30 .................................... GTGAGTGTACACAAAGATGAAGATGACATT 191521 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 191587 36 100.0 29 .................................... TATAACCGATATGCATAGTTGCACGTAAT 191652 36 100.0 29 .................................... AATATAACAACGTGGTTATAAGATCGGCA 191717 36 100.0 29 .................................... CCTGCGAAATATTGATAACCACGTCACAA 191782 36 100.0 30 .................................... GCGTGGTAAGTGTCGACTATCGACCTAACG 191848 36 100.0 30 .................................... TTTTCTATTTGCCGCTGCCCTTTTCTTATC 191914 36 100.0 29 .................................... AGGCGTGTTTGAATACGACGATCCGAGAA 191979 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 192045 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : CACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //