Array 1 779633-777830 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNI01000001.1 Streptococcus oralis strain BCA21 D8864_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 779632 28 96.4 33 ............C............... CCAAATCTTTTTCAGCGACGTATTCTGTACCAC 779571 28 100.0 33 ............................ CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 779510 28 92.9 33 A...........C............... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 779449 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 779388 28 92.9 33 ............C.......A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 779327 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 779266 28 89.3 33 A...........C........A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 779205 28 92.9 33 ............C.............T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 779144 28 92.9 33 ..............T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 779083 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 779022 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 778961 28 89.3 33 ............C.T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 778900 28 96.4 33 ............C............... TGAACAAGACAAGCAAATCAGCAGTCTAGCGAT 778839 28 92.9 33 ............C......A........ TGAATGGTATTATCTCACGAATGAAAACGTTGA 778778 28 96.4 33 ............G............... CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 778717 28 92.9 37 ............C........A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 778652 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 778591 28 96.4 33 ............G............... TGGTATCGGACAAAAATGATTGCTGGCCGTAGC 778530 28 96.4 33 ............G............... CATTCAAGATGGTGTGAATACATTCGTTTACAT 778469 28 92.9 33 ............C.T............. CGGTGCAGTCAGCATCCTTGTTATTTTGGCAGG 778408 28 96.4 33 ..............T............. TGGTTTATCGAGCATAAAAATGAACCAAACGCA 778347 28 100.0 33 ............................ CTATTCAGCGAATAAAGACGATAGCATTTTATT 778286 28 96.4 33 .......................T.... CGAGATAACTTGTCATCTCAGCTTCAAGTTCTC 778225 28 100.0 33 ............................ TGGTCAAGACTGGGCGCATAAGTCAGGGTATGA 778164 28 100.0 33 ............................ TAGACGTGTAGTTGATGAATTGAAGAATGAGTT 778103 28 96.4 33 ............C............... TACATCCACCCCAGTTTTAACAAGTCCACCAAC 778042 28 92.9 33 ............G..........A.... TAGCTTGACCGTGTACTCATTTTTCAAAATCGG 777981 28 92.9 33 ............C.......A....... CGAAGATAAGACTATTTCTGTTACTGACAAGGA 777920 28 89.3 33 ...........GC.T............. TAGGATATTGATACAGCCTAGTAGCTAACACAA 777859 28 85.7 0 ............G............CTA | TA [777833] ========== ====== ====== ====== ============================ ===================================== ================== 30 28 93.7 33 GTTTTTCCCGCATACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : CATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTGTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAACTCAGATTATCGTTTCTATCGGGCTGGCACAAAACTTTGCGGGTCTGAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGCCACATGAAATTGCAGGTCAAATCTCTAGCTCTCCTAGCAGGTGCTAGTGAGTCTGAAGTTGCTCTCCTCGTTGAGCGCCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [12-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23044-25259 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNI01000005.1 Streptococcus oralis strain BCA21 D8864_contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 23044 36 100.0 30 .................................... TGAAAATCATTACTCAAACTTACCAGTCAT 23110 36 100.0 30 .................................... TAAGGAAAAACTTCACGTCGCTGAGAAATT 23176 36 100.0 31 .................................... TTTGGTTCTCCGTTGATTTTAAAAATTTAAG 23243 36 100.0 30 .................................... CTTCGAGCGTGGCTGATTGAGTAGCCTCTT 23309 36 100.0 30 .................................... TTAGGGGTCTTGGAGCTTGGTCAGTCAATA 23375 36 100.0 30 .................................... TGCAAAGGTAAACTGTTCTTTTGAACTAAA 23441 36 100.0 30 .................................... CAAACCCGATTGGTCTAATCGTAACGGCAG 23507 36 100.0 30 .................................... CTTTCAAAATGATTTGCTCTTGTATGGAAT 23573 36 100.0 30 .................................... TTGATTATATAGGTATTAAGCAGGATGAAT 23639 36 100.0 30 .................................... AATAAAAGTTTTAGTCAATAACACATTTGT 23705 36 100.0 30 .................................... TTGTCTTCTTCTTTCCACCATTTATAGAGA 23771 36 100.0 30 .................................... CTTCTCCAAGCGTCAAATTTGCCAAGAAGT 23837 36 100.0 30 .................................... CTCAGGCGCATAGAACTCTTTACCGATGTT 23903 36 100.0 30 .................................... CCCAGCCCAAGCTCCAGAAAGCGAAGTTGA 23969 36 100.0 30 .................................... AGGCTAATCTCATCTATGAGCAGATGGACA 24035 36 100.0 30 .................................... TTGTCTTCAGGGGAAAAGGACTGAATGATA 24101 36 100.0 30 .................................... TTTTCAAGCAACTTAGCAGATGAAAATGTA 24167 36 100.0 30 .................................... AGGTCAAAGACTATCGTTCTCAGCGTGATA 24233 36 100.0 30 .................................... TCTTTTGGCCCGTCTCTTTGACTGTGATTT 24299 36 100.0 30 .................................... TCCAAGGAAAGGAAGTTTTAGAACAGGCTT 24365 36 100.0 30 .................................... GTTTGCCAAAAGTTCAATCTTCCCAATCCG 24431 36 100.0 30 .................................... TAGCGCTTTCGCTCTAGGTTTTAATTCATC 24497 36 100.0 30 .................................... TCTGCTCATAGATGAGATTAGCCTTCCTCT 24563 36 100.0 30 .................................... ATATGACTTTGATTTGCTCTTAAGCTTCCA 24629 36 100.0 30 .................................... TTTTAATTGCCGGATGCTCATTTGATAGTT 24695 36 100.0 30 .................................... AGTACCCCGAACAATAATGACAGCAGAAAG 24761 36 100.0 30 .................................... GCTTAGTGATCAATTTATCCGCTACAATGA 24827 36 100.0 31 .................................... CCTCACGGCTTTCTTGAGGAGTGACGTCTTT 24894 36 100.0 30 .................................... ACTTGACAAGCATTTCAATAAATGCTATAA 24960 36 100.0 30 .................................... ACTCCTACACGGTCATCAGCACCCAAACAT 25026 36 100.0 30 .................................... TGAGTATAACAACGCCAATAATCCAGAATA 25092 36 100.0 30 .................................... ATCTTTTGAAAAGCGTCTGAGTTCCCTGCT 25158 36 100.0 30 .................................... CTATCCTTGATGTTCTTATCAAGATCAAAT 25224 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AAAGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCCTACACATAGCTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACAGTTGCTCCGATTCGCTGGCTGGTGCTATACATTCTTTTTTCCCATTTGACTGGAAAAATGACTGCTAGAAAGGCACCTCCTACTGAACCACCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTATAGGGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //